JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LIF_chr22_30235453_30251759	0/0	c0003	609	3	0	0	3	0	0	copy fasta	LIF	chr22	30235453	30251759
LIF_chr22_30235453_30251759	0/0	c0004	609	1	1	0	0	0	0	copy fasta	LIF	chr22	30235453	30251759
LIG1_chr19_48110445_48175344	0/1	c0001	2760	117	23	20	59	6	8	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0002	2760	71	19	10	32	0	10	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	1/0	c0003	2760	69	13	20	22	1	12	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0004	2760	42	18	4	15	1	4	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0005	2760	4	4	0	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0006	2760	4	3	1	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0007	2760	4	4	0	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0008	2760	2	0	0	0	1	1	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0009	2760	2	0	0	2	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0010	2760	1	1	0	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0011	2760	1	0	0	0	0	1	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0012	2760	1	0	0	1	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0013	2698	1	0	0	1	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0014	2760	1	0	1	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0015	2760	1	0	0	0	0	1	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0016	2760	1	0	1	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0017	2760	1	0	0	0	0	1	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0018	2760	1	1	0	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0019	2760	1	0	1	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0020	2760	1	1	0	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0021	2760	1	1	0	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0022	2760	1	0	0	0	1	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0023	2760	1	1	0	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG1_chr19_48110445_48175344	0/0	c0024	2760	1	1	0	0	0	0	copy fasta	LIG1	chr19	48110445	48175344
LIG3_chr17_34975512_35014743	1/1	c0001	3030	388	84	78	168	12	44	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	c0002	3030	9	0	0	9	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	c0003	3030	9	9	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	c0004	3030	3	0	0	3	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	c0005	3030	3	0	0	3	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	c0006	3030	2	0	0	2	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	c0007	3030	2	0	0	2	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	c0008	3030	2	2	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	c0009	3030	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	c0010	3030	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	c0011	3030	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	c0012	3030	1	1	0	0	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	c0013	3030	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG3_chr17_34975512_35014743	0/0	c0014	3030	1	0	0	1	0	0	copy fasta	LIG3	chr17	34975512	35014743
LIG4_chr13_108202442_108220536	1/1	c0001	2736	269	59	54	111	12	31	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	c0002	2736	29	11	5	10	1	2	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	c0003	2736	25	0	5	16	2	2	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	c0004	2736	17	2	14	0	1	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	c0005	2736	11	11	0	0	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	c0006	2736	10	0	0	10	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	c0007	2736	5	5	0	0	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	c0008	2736	2	2	0	0	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	c0009	2736	1	1	0	0	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	c0010	2736	1	0	0	1	0	0	copy fasta	LIG4	chr13	108202442	108220536