JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LIG4_chr13_108202442_108220536	0/0	c0011	2736	1	0	0	0	0	1	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	c0012	2736	1	0	0	1	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	c0013	2736	1	0	0	1	0	0	copy fasta	LIG4	chr13	108202442	108220536
LIG4_chr13_108202442_108220536	0/0	c0014	2736	1	1	0	0	0	0	copy fasta	LIG4	chr13	108202442	108220536
LILRA1_chr19_54588632_54607381	0/1	c0001	1470	288	38	67	134	16	32	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0002	1470	70	3	9	56	0	2	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0003	1470	30	21	3	0	1	5	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0004	1470	12	1	2	8	0	1	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0005	1470	5	5	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0006	1470	4	4	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0007	1470	4	4	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0008	1470	3	0	0	0	0	3	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0009	1470	3	3	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0010	1470	3	3	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0011	1470	3	0	0	3	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0012	1470	3	0	0	3	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0013	1470	2	2	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0014	1470	2	1	1	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0015	1470	2	2	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0016	1470	2	0	0	0	0	2	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0017	1470	2	0	0	2	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0018	1470	1	0	1	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0019	1470	1	0	1	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0020	1470	1	1	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0021	1470	1	0	1	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0022	1470	1	1	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0023	1470	1	1	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0024	1470	1	0	0	1	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0025	1470	1	1	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0026	1470	1	0	0	0	1	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0027	1470	1	0	0	0	0	1	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0028	1470	1	0	0	1	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0029	1470	1	0	0	0	0	1	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0030	1470	1	0	1	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0031	1470	1	0	0	0	0	1	copy fasta	LILRA1	chr19	54588632	54607381
LILRA1_chr19_54588632_54607381	0/0	c0032	1470	1	1	0	0	0	0	copy fasta	LILRA1	chr19	54588632	54607381
LILRA2_chr19_54568790_54595287	0/1	c0001	1452	314	54	57	154	15	33	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0002	1452	37	4	15	13	1	4	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0003	1452	15	5	3	1	1	5	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0004	1452	8	1	3	0	1	3	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0005	1452	5	0	0	5	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0006	1452	5	5	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0007	1452	5	5	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0008	1452	4	4	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0009	1452	4	3	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0010	1452	3	0	0	0	0	3	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0011	1452	2	2	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0012	1452	2	1	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0013	1452	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0014	1452	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287