JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LILRA2_chr19_54568790_54595287	0/0	c0015	1452	1	0	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0016	1452	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0017	1452	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0018	1452	1	0	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0019	1452	1	0	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0020	1452	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0021	1452	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0022	1452	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0023	1452	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0024	1439	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0025	1452	1	0	1	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0026	1452	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0027	1452	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0028	1475	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0029	1452	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0030	1452	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0031	1452	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0032	1452	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0033	1452	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0034	1452	1	1	0	0	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA2_chr19_54568790_54595287	0/0	c0035	1452	1	0	0	1	0	0	copy fasta	LILRA2	chr19	54568790	54595287
LILRA4_chr19_54328185_54344162	0/0	c0001	1500	107	6	21	67	4	9	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0002	1500	97	21	18	35	2	21	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/1	c0003	1500	53	3	12	28	4	5	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0004	1500	34	0	8	22	1	3	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0005	1500	30	19	3	6	1	1	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0006	1500	30	0	5	22	0	3	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0007	1500	20	7	8	5	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0008	1500	9	7	1	1	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0009	1500	7	0	0	7	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0010	1500	5	0	0	5	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0011	1500	5	1	1	1	2	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0012	1500	4	0	3	0	1	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0013	1500	4	4	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0014	1500	4	4	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0015	1500	4	3	1	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0016	1500	4	4	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0017	1500	4	0	0	4	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0018	1500	3	0	0	3	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0019	1500	3	2	1	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0020	1500	3	0	1	2	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0021	1500	2	0	0	2	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0022	1500	2	0	0	2	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0023	1500	2	0	0	0	2	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0024	1500	2	0	0	0	0	2	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0025	1500	2	0	0	2	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0026	1500	2	0	0	0	0	2	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0027	1500	2	2	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0028	1500	1	0	0	1	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0029	1500	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162