JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LILRA4_chr19_54328185_54344162	0/0	c0030	1500	1	0	0	1	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0031	1500	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0032	1500	1	0	1	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0033	1500	1	0	1	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0034	1500	1	0	0	1	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0035	1500	1	0	1	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0036	1500	1	0	0	0	0	1	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0037	1500	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0038	1500	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0039	1500	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0040	1500	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0041	1500	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0042	1500	1	0	1	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0043	1500	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0044	1500	1	0	0	0	0	1	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0045	1500	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0046	1500	1	0	0	1	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0047	1500	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0048	1500	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0049	1500	1	0	1	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0050	1500	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0051	1500	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0052	1500	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0053	1500	1	0	0	0	1	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA4_chr19_54328185_54344162	0/0	c0054	1500	1	1	0	0	0	0	copy fasta	LILRA4	chr19	54328185	54344162
LILRA5_chr19_54302070_54318166	0/1	c0001	900	406	94	78	171	16	46	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	c0002	971	1	0	0	1	0	0	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	c0003	900	1	1	0	0	0	0	copy fasta	LILRA5	chr19	54302070	54318166
LILRA5_chr19_54302070_54318166	0/0	c0004	900	1	1	0	0	0	0	copy fasta	LILRA5	chr19	54302070	54318166
LILRA6_chr19_54231590_54247790	1/0	c0001	1446	184	11	31	126	6	9	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0002	1446	83	3	21	48	3	8	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0003	1446	19	0	8	2	0	9	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0004	1446	11	11	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0005	1446	10	0	2	2	0	6	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0006	1446	9	9	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0007	1446	6	5	1	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0008	1446	6	0	0	6	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0009	1446	5	0	0	5	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0010	1446	5	5	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0011	1446	5	0	1	0	1	3	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0012	1446	5	3	0	0	1	1	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0013	1446	5	2	1	1	0	1	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0014	1446	5	5	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0015	1446	5	5	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0016	1446	4	0	0	4	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0017	1446	3	1	1	0	1	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0018	1446	3	0	0	3	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0019	1446	3	0	0	3	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0020	1446	3	3	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0021	1446	3	0	1	0	0	2	copy fasta	LILRA6	chr19	54231590	54247790