JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LILRA6_chr19_54231590_54247790	0/0	c0072	1446	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0073	1446	1	0	0	0	0	1	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0074	1446	1	0	0	0	1	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0075	1446	1	0	0	0	0	1	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0076	1446	1	0	1	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0077	1446	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0078	1446	1	0	0	1	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0079	1446	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0080	1446	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRA6_chr19_54231590_54247790	0/0	c0081	1446	1	1	0	0	0	0	copy fasta	LILRA6	chr19	54231590	54247790
LILRB1_chr19_54625484_54643022	0/0	c0001	1959	136	23	25	55	9	24	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0002	1959	108	6	11	85	0	6	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0003	1959	41	1	15	21	3	1	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0004	1959	35	1	10	20	1	3	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0005	1959	10	8	2	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0006	1959	9	0	2	2	3	2	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0007	1959	9	7	2	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0008	1959	6	6	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0009	1959	6	1	3	1	0	1	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0010	1959	6	5	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0011	1959	5	5	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0012	1959	4	4	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0013	1959	4	4	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0014	1959	4	3	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0015	1959	3	3	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0016	1959	3	0	0	0	0	3	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0017	1959	3	0	0	3	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0018	1959	2	2	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0019	1959	2	0	2	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/1	c0020	1959	2	0	0	0	1	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0021	1959	2	0	2	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0022	1959	2	2	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0023	1959	2	2	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0024	1959	1	0	0	0	0	1	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0025	1959	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0026	1959	1	0	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0027	1959	1	0	0	1	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0028	1959	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0029	1959	1	0	0	1	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0030	1959	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0031	1959	1	0	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0032	1959	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0033	1959	1	0	0	1	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0034	1959	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0035	1959	1	0	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0036	1959	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0037	1959	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0038	1959	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0039	1959	1	0	0	1	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0040	1959	1	0	0	1	0	0	copy fasta	LILRB1	chr19	54625484	54643022