JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANK3_chr10_60021298_60394875	0/0	c0073	13134	1	0	1	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0074	13134	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0075	13134	1	0	1	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0076	13134	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0077	13134	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0078	13134	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0079	13134	1	0	1	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0080	13134	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0081	13134	1	0	0	0	0	1	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0082	13134	1	0	0	0	1	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0083	13134	1	0	1	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0084	13134	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0085	13134	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0086	13134	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0087	13134	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0088	13134	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0089	13134	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0090	13134	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0091	13134	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANK3_chr10_60021298_60394875	0/0	c0092	13134	1	1	0	0	0	0	copy fasta	ANK3	chr10	60021298	60394875
ANKAR_chr2_189669670_189751647	0/1	c0001	4305	233	64	48	89	10	21	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0002	4305	10	0	0	6	0	4	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0003	4305	8	1	0	4	0	3	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	1/0	c0004	4305	6	5	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0005	4305	6	5	1	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0006	4305	5	4	1	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0007	4305	4	3	1	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0008	4305	4	0	4	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0009	4305	3	3	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0010	4305	2	2	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0011	4305	2	2	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0012	4305	1	1	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0013	4305	1	1	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0014	4305	1	1	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0015	4305	1	1	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0016	4305	1	0	1	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0017	4305	1	1	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0018	4305	1	0	0	1	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0019	4305	1	0	0	1	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0020	4305	1	1	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0021	4305	1	1	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0022	4305	1	1	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0023	4305	1	0	0	1	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKAR_chr2_189669670_189751647	0/0	c0024	4305	1	1	0	0	0	0	copy fasta	ANKAR	chr2	189669670	189751647
ANKDD1A_chr15_64906902_64963691	0/0	c0001	1569	140	22	32	65	10	11	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/1	c0002	1569	79	29	8	39	0	2	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	c0003	1569	56	9	13	13	3	18	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	1/0	c0004	1569	29	15	5	2	1	5	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	c0005	1569	7	0	0	7	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	c0006	1569	5	5	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691