JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LILRB1_chr19_54625484_54643022	0/0	c0041	1959	1	0	0	1	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0042	1959	1	0	0	1	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0043	1959	1	0	0	1	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0044	1959	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0045	1959	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0046	1959	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0047	1959	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0048	1959	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0049	1959	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0050	1959	1	0	0	0	0	1	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0051	1959	1	1	0	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0052	1959	1	0	0	0	1	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0053	1959	1	0	0	1	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB1_chr19_54625484_54643022	0/0	c0054	1959	1	0	1	0	0	0	copy fasta	LILRB1	chr19	54625484	54643022
LILRB2_chr19_54268812_54286110	0/0	c0001	1794	143	6	11	113	5	8	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0002	1794	67	16	23	8	2	18	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0003	1794	50	4	17	27	0	2	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/1	c0004	1794	37	5	10	7	3	11	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0005	1794	21	10	0	11	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0006	1794	16	15	1	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0007	1794	12	11	1	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0008	1794	6	0	4	0	2	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0009	1794	5	0	2	0	3	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0010	1794	5	0	0	5	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0011	1794	3	0	0	0	0	3	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0012	1794	3	3	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0013	1794	3	3	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0014	1794	3	1	0	0	2	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0015	1794	2	0	0	2	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0016	1794	2	0	0	0	0	2	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0017	1794	2	0	0	0	0	2	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0018	1794	2	0	0	1	1	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0019	1794	2	0	2	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0020	1794	2	2	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0021	1794	2	2	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0022	1794	1	0	0	0	0	1	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0023	1794	1	0	0	0	0	1	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0024	1794	1	0	1	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0025	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0026	1794	1	0	1	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0027	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0028	1794	1	0	0	0	0	1	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0029	1794	1	0	1	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0030	1794	1	0	1	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0031	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0032	1794	1	0	1	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0033	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0034	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0035	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0036	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110