JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LILRB2_chr19_54268812_54286110	0/0	c0037	1794	1	0	1	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0038	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0039	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0040	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0041	1794	1	0	1	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0042	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0043	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0044	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0045	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0046	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0047	1794	1	0	0	1	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0048	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0049	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0050	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0051	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0052	1794	1	1	0	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0053	1794	1	0	1	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0054	1794	1	0	0	0	0	1	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0055	1794	1	0	0	1	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0056	1794	1	0	0	1	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0057	1794	1	0	1	0	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0058	1794	1	0	0	1	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0059	1794	1	0	0	1	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0060	1794	1	0	0	1	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0061	1794	1	0	0	1	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB2_chr19_54268812_54286110	0/0	c0062	1794	1	0	0	1	0	0	copy fasta	LILRB2	chr19	54268812	54286110
LILRB3_chr19_54211278_54228007	0/0	c0001	1896	96	16	19	40	8	13	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0002	1896	66	0	4	58	2	2	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0003	1896	42	1	4	35	0	2	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0004	1896	22	0	7	13	1	1	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0005	1896	20	0	4	16	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0006	1896	20	16	2	0	1	1	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/1	c0007	1896	17	1	7	1	0	7	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0008	1896	17	0	0	17	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0009	1896	15	0	4	0	2	9	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0010	1896	14	8	2	1	1	2	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0011	1896	11	2	7	0	2	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0012	1896	8	8	0	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0013	1896	7	0	1	5	0	1	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0014	1896	6	0	0	6	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0015	587	6	0	1	5	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0016	638	5	3	2	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0017	1896	4	1	2	0	1	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0018	1896	4	4	0	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0019	1896	3	2	1	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0020	1896	3	3	0	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0021	587	3	3	0	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0022	1896	2	0	2	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0023	1896	2	0	0	2	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0024	1896	2	2	0	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007