JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LILRB3_chr19_54211278_54228007	0/0	c0075	1896	1	0	0	1	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0076	1896	1	0	1	0	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0077	587	1	0	0	1	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0078	587	1	0	0	1	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB3_chr19_54211278_54228007	0/0	c0079	247	1	0	0	1	0	0	copy fasta	LILRB3	chr19	54211278	54228007
LILRB4_chr19_54657985_54673718	0/0	c0001	1347	45	0	3	41	0	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0002	1347	28	1	3	22	1	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0003	1347	23	1	6	10	0	6	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0004	1347	23	0	8	12	2	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0005	1347	21	2	5	14	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/1	c0006	1347	19	1	7	6	1	3	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0007	1347	18	9	3	2	0	4	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0008	1347	17	0	1	15	0	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0009	1347	16	0	3	9	0	4	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0010	1347	15	0	2	13	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0011	1347	14	7	2	4	0	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0012	1347	14	2	5	6	1	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0013	1347	13	6	2	4	1	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0014	1347	13	4	3	4	0	2	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0015	1347	13	0	4	6	1	2	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0016	1347	12	0	1	8	0	3	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0017	1347	12	7	1	1	1	2	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0018	1347	11	3	1	7	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0019	1347	9	0	0	9	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0020	1347	8	1	1	4	2	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0021	1347	8	0	6	2	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0022	1347	8	0	3	3	1	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0023	1347	7	2	3	2	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0024	1347	6	0	0	5	0	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0025	1346	6	6	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0026	1347	5	1	0	2	0	2	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0027	1347	5	3	0	0	0	2	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0028	1347	5	0	0	3	1	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0029	1347	5	4	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0030	1347	4	0	0	4	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0031	1347	3	3	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0032	1347	3	3	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0033	1347	3	1	0	1	0	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0034	1347	3	2	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0035	1347	3	0	0	3	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0036	1347	3	0	0	1	0	2	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0037	1347	2	0	0	0	2	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0038	1346	2	2	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0039	1347	2	2	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0040	1347	2	2	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0041	1347	2	0	0	2	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0042	1347	2	2	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0043	1347	2	0	0	0	0	2	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0044	1346	2	2	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0045	1347	2	0	1	0	1	0	copy fasta	LILRB4	chr19	54657985	54673718