JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LILRB4_chr19_54657985_54673718	0/0	c0046	1347	2	0	1	0	0	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0047	1347	2	0	0	2	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0048	1347	2	0	0	2	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0049	1347	2	1	0	0	0	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0050	1347	2	0	0	0	1	1	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0051	1347	2	0	0	0	0	2	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0052	1346	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0053	1347	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0054	1347	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0055	1346	1	0	0	1	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0056	1347	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0057	1346	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0058	1347	1	0	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0059	1347	1	0	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0060	1347	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0061	1347	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0062	1346	1	0	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0063	1347	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0064	1346	1	0	0	0	1	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0065	1347	1	0	0	1	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0066	1347	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0067	1346	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0068	1347	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0069	1347	1	0	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0070	1346	1	0	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0071	1347	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0072	1346	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0073	1346	1	0	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0074	1347	1	0	0	1	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0075	1347	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0076	1347	1	0	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0077	1346	1	0	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0078	1347	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0079	1347	1	0	0	1	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0080	1347	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0081	1346	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0082	1347	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0083	1347	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0084	1347	1	0	0	0	1	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0085	1347	1	1	0	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0086	1347	1	0	0	1	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB4_chr19_54657985_54673718	0/0	c0087	1347	1	0	1	0	0	0	copy fasta	LILRB4	chr19	54657985	54673718
LILRB5_chr19_54244421_54262273	0/0	c0001	1776	225	34	32	140	7	12	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0002	1776	52	11	14	16	3	8	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0003	1776	41	23	1	17	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0004	1776	41	4	16	8	4	9	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0005	1776	29	4	14	7	1	3	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0006	1776	28	0	2	23	2	1	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0007	1776	13	13	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0008	1776	6	3	1	0	0	2	copy fasta	LILRB5	chr19	54244421	54262273