JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LILRB5_chr19_54244421_54262273	0/0	c0009	1776	6	0	0	6	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0010	1776	5	0	0	2	0	3	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0011	1776	4	1	0	0	1	2	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0012	1776	4	0	0	3	0	1	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0013	1776	3	3	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0014	1776	2	0	0	2	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0015	1776	2	0	0	2	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0016	1776	2	2	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0017	1776	2	0	0	2	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0018	1776	1	0	0	0	0	1	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0019	1776	1	0	0	1	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0020	1776	1	1	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0021	1776	1	0	1	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0022	1776	1	0	0	1	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0023	1776	1	0	0	0	0	1	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0024	1776	1	0	1	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0025	1776	1	1	0	0	0	0	copy fasta	LILRB5	chr19	54244421	54262273
LILRB5_chr19_54244421_54262273	0/0	c0026	1776	1	0	0	0	0	1	copy fasta	LILRB5	chr19	54244421	54262273
LIM2_chr19_51374909_51392974	1/1	c0001	522	424	95	83	180	18	46	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	c0002	522	3	3	0	0	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	c0003	522	2	0	0	2	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	c0004	522	2	2	0	0	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	c0005	522	2	0	0	2	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	c0006	522	1	0	0	1	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	c0007	522	1	0	0	1	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	c0008	522	1	0	1	0	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	c0009	522	1	0	0	1	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIM2_chr19_51374909_51392974	0/0	c0010	522	1	0	0	1	0	0	copy fasta	LIM2	chr19	51374909	51392974
LIMA1_chr12_50170788_50288520	1/1	c0001	2280	285	78	51	111	9	34	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	0/0	c0002	2280	4	2	2	0	0	0	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	0/0	c0003	2280	1	0	1	0	0	0	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	0/0	c0004	2280	1	0	0	1	0	0	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	0/0	c0005	2280	1	0	0	0	1	0	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	0/0	c0006	2280	1	0	0	1	0	0	copy fasta	LIMA1	chr12	50170788	50288520
LIMA1_chr12_50170788_50288520	0/0	c0007	2280	1	0	0	1	0	0	copy fasta	LIMA1	chr12	50170788	50288520
LIMCH1_chr4_41533157_41705044	1/0	c0001	4404	36	8	14	7	0	6	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0002	4404	26	11	6	3	0	6	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0003	4404	19	17	1	0	0	1	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0004	4404	11	0	7	0	0	4	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0005	4404	9	5	2	0	0	2	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0006	4404	4	0	0	4	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0007	4404	3	3	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0008	4404	3	3	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0009	4404	3	3	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0010	4404	3	3	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0011	4404	2	2	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0012	4404	2	2	0	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0013	4404	2	1	1	0	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0014	4404	2	0	0	2	0	0	copy fasta	LIMCH1	chr4	41533157	41705044
LIMCH1_chr4_41533157_41705044	0/0	c0015	4404	2	0	0	2	0	0	copy fasta	LIMCH1	chr4	41533157	41705044