JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LIMK1_chr7_74078804_74127525	0/0	c0004	1944	3	2	1	0	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	c0005	1944	2	0	0	2	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	c0006	1944	2	0	0	2	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	c0007	1944	1	0	0	1	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	c0008	1944	1	1	0	0	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	c0009	1944	1	0	0	0	1	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	c0010	1944	1	0	0	1	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	c0011	1944	1	1	0	0	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	c0012	1944	1	0	0	1	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	c0013	1944	1	0	0	0	0	1	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	c0014	1944	1	1	0	0	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	c0015	1944	1	0	0	0	0	1	copy fasta	LIMK1	chr7	74078804	74127525
LIMK1_chr7_74078804_74127525	0/0	c0016	1944	1	0	1	0	0	0	copy fasta	LIMK1	chr7	74078804	74127525
LIMK2_chr22_31207298_31285080	0/1	c0001	1917	218	37	26	129	5	20	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	c0002	1917	65	39	17	1	1	7	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	1/0	c0003	1917	57	1	23	22	6	4	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	c0004	1917	4	4	0	0	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	c0005	1917	3	0	1	0	0	2	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	c0006	1917	2	0	0	0	2	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	c0007	1917	2	0	0	1	0	1	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	c0008	1917	2	2	0	0	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	c0009	1917	1	0	1	0	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	c0010	1917	1	0	0	1	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	c0011	1917	1	1	0	0	0	0	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	c0012	1917	1	0	0	0	0	1	copy fasta	LIMK2	chr22	31207298	31285080
LIMK2_chr22_31207298_31285080	0/0	c0013	1917	1	0	0	0	0	1	copy fasta	LIMK2	chr22	31207298	31285080
LIMS1_chr2_108529470_108692246	1/0	c0001	1014	137	57	30	21	6	22	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/1	c0002	1014	103	21	14	42	6	19	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	c0003	1014	2	2	0	0	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	c0004	1014	2	2	0	0	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	c0005	1014	1	0	0	1	0	0	copy fasta	LIMS1	chr2	108529470	108692246
LIMS1_chr2_108529470_108692246	0/0	c0006	1014	1	0	0	0	0	1	copy fasta	LIMS1	chr2	108529470	108692246
LIMS2_chr2_127633426_127680530	0/1	c0001	1026	194	40	47	81	9	16	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	1/0	c0002	1026	139	48	30	32	5	23	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	c0003	1026	8	5	0	0	0	3	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	c0004	1026	1	0	0	1	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	c0005	1026	1	1	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	c0006	1026	1	0	1	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	c0007	1026	1	0	0	1	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	c0008	1026	1	1	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	c0009	1026	1	0	0	1	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS2_chr2_127633426_127680530	0/0	c0010	1026	1	1	0	0	0	0	copy fasta	LIMS2	chr2	127633426	127680530
LIMS3_chr2_109893688_109930625	0/0	c0001	1197	16	15	1	0	0	0	copy fasta	LIMS3	chr2	109893688	109930625
LIMS3_chr2_109893688_109930625	0/0	c0002	1197	4	3	1	0	0	0	copy fasta	LIMS3	chr2	109893688	109930625
LIMS3_chr2_109893688_109930625	0/0	c0003	1197	1	1	0	0	0	0	copy fasta	LIMS3	chr2	109893688	109930625
LIMS3_chr2_109893688_109930625	0/0	c0004	1197	1	1	0	0	0	0	copy fasta	LIMS3	chr2	109893688	109930625
LIMS4_chr2_110440883_110477816	0/0	c0001	1197	58	8	16	17	6	11	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	c0002	1197	18	12	1	4	0	1	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	c0003	1197	6	0	1	4	0	1	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	c0004	1197	4	3	0	1	0	0	copy fasta	LIMS4	chr2	110440883	110477816