JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LIMS4_chr2_110440883_110477816	0/0	c0005	1197	1	0	0	1	0	0	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	c0006	1197	1	0	0	1	0	0	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	c0007	1197	1	1	0	0	0	0	copy fasta	LIMS4	chr2	110440883	110477816
LIMS4_chr2_110440883_110477816	0/0	c0008	1197	1	0	0	0	0	1	copy fasta	LIMS4	chr2	110440883	110477816
LIN28A_chr1_26405817_26434728	1/1	c0001	630	363	87	76	132	16	50	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	c0002	630	10	8	2	0	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	c0003	630	1	1	0	0	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	c0004	630	1	0	0	1	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28A_chr1_26405817_26434728	0/0	c0005	630	1	0	0	1	0	0	copy fasta	LIN28A	chr1	26405817	26434728
LIN28B_chr6_104952107_105088332	1/1	c0001	753	276	82	38	106	16	32	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	c0002	753	1	1	0	0	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN28B_chr6_104952107_105088332	0/0	c0003	753	1	1	0	0	0	0	copy fasta	LIN28B	chr6	104952107	105088332
LIN37_chr19_35743576_35759519	1/1	c0001	741	398	87	66	188	12	43	copy fasta	LIN37	chr19	35743576	35759519
LIN37_chr19_35743576_35759519	0/0	c0002	741	7	7	0	0	0	0	copy fasta	LIN37	chr19	35743576	35759519
LIN37_chr19_35743576_35759519	0/0	c0003	741	2	0	0	0	2	0	copy fasta	LIN37	chr19	35743576	35759519
LIN37_chr19_35743576_35759519	0/0	c0004	741	1	0	0	0	0	1	copy fasta	LIN37	chr19	35743576	35759519
LIN52_chr14_74079956_74206493	1/1	c0001	339	341	71	68	146	12	42	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	c0002	339	11	11	0	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN52_chr14_74079956_74206493	0/0	c0003	339	2	2	0	0	0	0	copy fasta	LIN52	chr14	74079956	74206493
LIN54_chr4_82919603_83015823	0/1	c0001	2250	298	73	43	143	6	32	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	c0002	2250	2	2	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	c0003	2250	1	0	0	1	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	c0004	2250	1	1	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	0/0	c0005	2250	1	0	1	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN54_chr4_82919603_83015823	1/0	c0006	2250	1	0	0	0	0	0	copy fasta	LIN54	chr4	82919603	83015823
LIN7A_chr12_80787520_80942934	1/1	c0001	702	292	82	66	104	6	32	copy fasta	LIN7A	chr12	80787520	80942934
LIN7B_chr19_49109370_49123460	1/1	c0001	624	369	86	76	143	16	46	copy fasta	LIN7B	chr19	49109370	49123460
LIN7B_chr19_49109370_49123460	0/0	c0002	624	4	4	0	0	0	0	copy fasta	LIN7B	chr19	49109370	49123460
LIN7B_chr19_49109370_49123460	0/0	c0003	624	1	0	0	1	0	0	copy fasta	LIN7B	chr19	49109370	49123460
LIN7B_chr19_49109370_49123460	0/0	c0004	624	1	0	0	1	0	0	copy fasta	LIN7B	chr19	49109370	49123460
LIN7B_chr19_49109370_49123460	0/0	c0005	624	1	0	0	1	0	0	copy fasta	LIN7B	chr19	49109370	49123460
LIN7C_chr11_27489418_27511769	1/1	c0001	594	399	80	74	195	13	35	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	c0002	594	3	0	0	3	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	c0003	594	1	0	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	c0004	594	1	0	0	0	0	1	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	c0005	594	1	0	0	1	0	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN7C_chr11_27489418_27511769	0/0	c0006	594	1	0	0	0	1	0	copy fasta	LIN7C	chr11	27489418	27511769
LIN9_chr1_226226157_226314164	0/1	c0001	1629	260	56	49	121	5	28	copy fasta	LIN9	chr1	226226157	226314164
LIN9_chr1_226226157_226314164	1/0	c0002	1629	99	20	19	40	3	16	copy fasta	LIN9	chr1	226226157	226314164
LIN9_chr1_226226157_226314164	0/0	c0003	1629	1	0	1	0	0	0	copy fasta	LIN9	chr1	226226157	226314164
LIN9_chr1_226226157_226314164	0/0	c0004	1629	1	0	1	0	0	0	copy fasta	LIN9	chr1	226226157	226314164
LIN9_chr1_226226157_226314164	0/0	c0005	1629	1	0	0	1	0	0	copy fasta	LIN9	chr1	226226157	226314164
LIN9_chr1_226226157_226314164	0/0	c0006	1629	1	0	0	1	0	0	copy fasta	LIN9	chr1	226226157	226314164
LIN9_chr1_226226157_226314164	0/0	c0007	1629	1	0	0	1	0	0	copy fasta	LIN9	chr1	226226157	226314164
LINGO1_chr15_77608027_77637912	0/0	c0001	1863	155	50	28	63	4	10	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/1	c0002	1863	115	12	25	56	5	16	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	1/0	c0003	1863	90	24	26	22	8	9	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	c0004	1863	6	5	0	0	1	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	c0005	1863	5	0	0	5	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	c0006	1863	4	0	0	3	0	1	copy fasta	LINGO1	chr15	77608027	77637912