JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LINGO1_chr15_77608027_77637912	0/0	c0007	1863	4	0	0	4	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	c0008	1863	3	3	0	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	c0009	1863	1	0	1	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	c0010	1863	1	0	0	1	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	c0011	1863	1	0	1	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO1_chr15_77608027_77637912	0/0	c0012	1863	1	0	1	0	0	0	copy fasta	LINGO1	chr15	77608027	77637912
LINGO2_chr9_27932617_29218601	0/0	c0001	1821	59	27	12	18	0	2	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	c0002	1821	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	c0003	1821	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO2_chr9_27932617_29218601	0/0	c0004	1821	1	1	0	0	0	0	copy fasta	LINGO2	chr9	27932617	29218601
LINGO3_chr19_2282164_2313154	1/1	c0001	1779	181	26	43	76	12	22	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	c0002	1779	132	33	20	61	2	16	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	c0003	1779	104	36	19	39	2	8	copy fasta	LINGO3	chr19	2282164	2313154
LINGO3_chr19_2282164_2313154	0/0	c0004	1779	1	1	0	0	0	0	copy fasta	LINGO3	chr19	2282164	2313154
LINGO4_chr1_151795264_151810419	1/1	c0001	1782	330	80	63	138	17	30	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	c0002	1782	88	8	19	50	0	11	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	c0003	1782	3	3	0	0	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	c0004	1782	2	2	0	0	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	c0005	1782	1	0	0	1	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	c0006	1782	1	0	0	1	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	c0007	1782	1	1	0	0	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	c0008	1782	1	0	0	1	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	c0009	1782	1	0	0	1	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	c0010	1782	1	0	0	0	1	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	c0011	1782	1	0	0	1	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	c0012	1782	1	0	0	1	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	c0013	1782	1	0	0	1	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	c0014	1782	1	0	0	0	0	1	copy fasta	LINGO4	chr1	151795264	151810419
LINGO4_chr1_151795264_151810419	0/0	c0015	1782	1	0	0	1	0	0	copy fasta	LINGO4	chr1	151795264	151810419
LINS1_chr15_100561924_100607184	0/1	c0001	2274	128	37	31	30	5	24	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0002	2274	93	9	17	49	6	12	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	1/0	c0003	2274	71	8	2	58	0	2	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0004	2274	50	6	6	38	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0005	2274	36	9	11	8	1	7	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0006	2274	19	6	4	6	0	3	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0007	2274	8	6	2	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0008	2274	5	5	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0009	2274	3	3	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0010	2274	2	2	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0011	2274	2	0	2	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0012	2274	2	1	1	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0013	2274	2	2	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0014	2274	1	0	1	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0015	2274	1	1	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0016	2274	1	0	1	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0017	2274	1	0	0	1	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0018	2274	1	1	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0019	2274	1	1	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0020	2274	1	0	0	1	0	0	copy fasta	LINS1	chr15	100561924	100607184
LINS1_chr15_100561924_100607184	0/0	c0021	2274	1	1	0	0	0	0	copy fasta	LINS1	chr15	100561924	100607184