JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKDD1A_chr15_64906902_64963691	0/0	c0007	1569	3	2	1	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	c0008	1569	3	0	0	3	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	c0009	1569	2	2	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	c0010	1569	2	2	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	c0011	1569	2	0	0	2	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	c0012	1569	1	1	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	c0013	1569	1	1	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	c0014	1569	1	1	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	c0015	1569	1	1	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	c0016	1569	1	1	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	c0017	1569	1	0	1	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	c0018	1569	1	1	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	c0019	1569	1	1	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	c0020	1569	1	0	0	1	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1A_chr15_64906902_64963691	0/0	c0021	1569	1	1	0	0	0	0	copy fasta	ANKDD1A	chr15	64906902	64963691
ANKDD1B_chr5_75606453_75676846	0/1	c0001	1587	102	12	20	55	4	10	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0002	1587	86	7	8	60	1	10	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0003	1587	46	5	4	36	0	1	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0004	1587	26	0	2	15	1	8	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	1/0	c0005	1587	17	3	10	0	2	1	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0006	1587	12	3	3	5	0	1	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0007	1587	11	9	2	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0008	1587	10	9	1	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0009	1582	8	7	1	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0010	1587	6	0	0	6	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0011	1587	5	3	1	1	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0012	1587	5	2	3	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0013	1587	4	1	2	0	0	1	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0014	1587	3	0	0	3	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0015	1582	3	1	2	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0016	1574	2	2	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0017	1587	2	2	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0018	1587	2	2	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0019	1587	2	2	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0020	1587	1	0	1	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0021	1587	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0022	1587	1	0	0	0	0	1	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0023	1587	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0024	1574	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0025	1582	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0026	1582	1	0	1	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0027	1587	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0028	1587	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0029	1587	1	0	0	0	0	1	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0030	1582	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0031	1587	1	0	1	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0032	1587	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0033	1587	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0034	1582	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0035	1587	1	0	0	1	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846