JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LINS1_chr15_100561924_100607184	0/0	c0022	2274	1	0	0	1	0	0	copy fasta	LINS1	chr15	100561924	100607184
LIPA_chr10_89208572_89256775	1/0	c0001	1200	220	50	36	100	8	25	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/1	c0002	1200	105	11	26	44	3	20	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	c0003	1200	52	25	5	16	1	5	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	c0004	1200	2	0	0	2	0	0	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	c0005	1200	1	0	0	1	0	0	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	c0006	1200	1	1	0	0	0	0	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	c0007	1200	1	1	0	0	0	0	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	c0008	1200	1	0	1	0	0	0	copy fasta	LIPA	chr10	89208572	89256775
LIPA_chr10_89208572_89256775	0/0	c0009	1200	1	0	0	1	0	0	copy fasta	LIPA	chr10	89208572	89256775
LIPC_chr15_58426991_58574844	0/0	c0001	1500	38	14	5	17	0	2	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/1	c0002	1500	37	0	7	27	1	1	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0003	1500	37	20	6	5	0	6	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0004	1500	30	2	16	1	5	6	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0005	1500	27	3	4	16	1	3	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0006	1500	26	5	14	1	2	4	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0007	1500	26	2	2	13	2	7	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0008	1500	13	1	0	10	0	2	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0009	1500	13	1	2	9	0	1	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0010	1500	12	4	0	7	0	1	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0011	1500	12	0	0	9	0	3	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0012	1500	10	4	0	2	3	1	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0013	1500	9	1	4	1	2	1	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0014	1500	8	1	0	7	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0015	1500	8	0	1	6	0	1	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0016	1500	5	5	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0017	1500	5	5	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0018	1500	4	3	0	1	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0019	1500	3	0	0	0	0	3	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0020	1500	3	1	0	2	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0021	1500	3	3	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0022	1500	2	0	0	2	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0023	1500	2	0	0	2	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0024	1500	2	0	2	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0025	1500	2	1	0	1	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0026	1500	1	0	0	1	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0027	1500	1	1	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0028	1500	1	1	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0029	1500	1	0	0	1	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0030	1500	1	1	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0031	1500	1	0	0	0	0	1	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0032	1500	1	0	0	0	0	1	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0033	1500	1	0	0	0	0	1	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0034	1500	1	0	0	1	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0035	1500	1	0	0	1	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	1/0	c0036	1500	1	0	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0037	1500	1	1	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0038	1500	1	0	0	1	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0039	1500	1	1	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0040	1500	1	1	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844