JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LIPC_chr15_58426991_58574844	0/0	c0041	1500	1	1	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0042	1500	1	0	0	0	0	1	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0043	1500	1	1	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0044	1500	1	1	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0045	1500	1	1	0	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPC_chr15_58426991_58574844	0/0	c0046	1500	1	0	1	0	0	0	copy fasta	LIPC	chr15	58426991	58574844
LIPE_chr19_42396514_42432388	1/1	c0001	3231	169	46	48	44	4	25	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0002	3231	14	13	1	0	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0003	3231	11	0	6	5	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0004	3231	7	6	1	0	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0005	3231	6	6	0	0	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0006	3231	3	3	0	0	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0007	3231	2	2	0	0	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0008	3231	2	0	2	0	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0009	3231	2	0	0	2	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0010	3231	1	1	0	0	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0011	3231	1	1	0	0	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0012	3231	1	1	0	0	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0013	3231	1	0	0	1	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0014	3231	1	0	0	0	1	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0015	3231	1	0	0	1	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0016	3231	1	0	0	1	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0017	3231	1	0	0	0	1	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0018	3231	1	0	0	0	0	1	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0019	3231	1	1	0	0	0	0	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0020	3231	1	0	0	0	0	1	copy fasta	LIPE	chr19	42396514	42432388
LIPE_chr19_42396514_42432388	0/0	c0021	3231	1	0	0	0	0	1	copy fasta	LIPE	chr19	42396514	42432388
LIPF_chr10_88659442_88683814	1/1	c0001	1197	245	53	47	97	16	30	copy fasta	LIPF	chr10	88659442	88683814
LIPF_chr10_88659442_88683814	0/0	c0002	1197	98	1	17	66	2	12	copy fasta	LIPF	chr10	88659442	88683814
LIPF_chr10_88659442_88683814	0/0	c0003	1197	35	22	2	10	0	1	copy fasta	LIPF	chr10	88659442	88683814
LIPF_chr10_88659442_88683814	0/0	c0004	1197	30	12	9	8	0	1	copy fasta	LIPF	chr10	88659442	88683814
LIPF_chr10_88659442_88683814	0/0	c0005	1197	1	1	0	0	0	0	copy fasta	LIPF	chr10	88659442	88683814
LIPF_chr10_88659442_88683814	0/0	c0006	1197	1	1	0	0	0	0	copy fasta	LIPF	chr10	88659442	88683814
LIPF_chr10_88659442_88683814	0/0	c0007	1197	1	0	0	1	0	0	copy fasta	LIPF	chr10	88659442	88683814
LIPF_chr10_88659442_88683814	0/0	c0008	1197	1	0	0	1	0	0	copy fasta	LIPF	chr10	88659442	88683814
LIPF_chr10_88659442_88683814	0/0	c0009	1197	1	0	1	0	0	0	copy fasta	LIPF	chr10	88659442	88683814
LIPF_chr10_88659442_88683814	0/0	c0010	1197	1	0	0	1	0	0	copy fasta	LIPF	chr10	88659442	88683814
LIPG_chr18_49557057_49604185	1/0	c0001	1503	264	54	62	104	10	33	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/1	c0002	1503	83	10	15	44	3	10	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	c0003	1503	11	10	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	c0004	1503	8	8	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	c0005	1503	6	5	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	c0006	1503	5	5	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	c0007	1503	1	1	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	c0008	1503	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	c0009	1503	1	0	1	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	c0010	1503	1	0	0	0	1	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	c0011	1503	1	1	0	0	0	0	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	c0012	1503	1	0	0	0	0	1	copy fasta	LIPG	chr18	49557057	49604185
LIPG_chr18_49557057_49604185	0/0	c0013	1503	1	0	0	1	0	0	copy fasta	LIPG	chr18	49557057	49604185