JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LIPH_chr3_185501262_185557588	1/1	c0001	1356	227	54	38	105	5	23	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	c0002	1356	119	28	24	44	7	16	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	c0003	1356	4	3	1	0	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	c0004	1356	2	0	1	0	0	1	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	c0005	1356	1	0	0	1	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	c0006	1356	1	0	0	1	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	c0007	1377	1	0	0	1	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	c0008	1356	1	0	0	1	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	c0009	1356	1	1	0	0	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPH_chr3_185501262_185557588	0/0	c0010	1356	1	0	0	1	0	0	copy fasta	LIPH	chr3	185501262	185557588
LIPI_chr21_14103813_14215955	1/1	c0001	1383	97	16	14	50	3	12	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0002	1383	61	13	4	35	2	7	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0003	1383	54	24	7	12	5	6	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0004	1383	39	22	12	2	0	3	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0005	1383	37	1	4	28	1	3	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0006	1383	20	1	6	9	0	4	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0007	1383	19	2	4	7	3	3	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0008	1383	13	1	3	9	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0009	1383	3	1	2	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0010	1383	3	3	0	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0011	1383	2	0	2	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0012	1383	2	0	0	2	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0013	1383	2	1	1	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0014	1383	1	0	0	1	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0015	1383	1	0	0	0	0	1	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0016	1383	1	1	0	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0017	1383	1	1	0	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0018	1383	1	1	0	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0019	1383	1	0	1	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0020	1383	1	0	0	1	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0021	1383	1	0	0	0	0	1	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0022	1383	1	1	0	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPI_chr21_14103813_14215955	0/0	c0023	1383	1	1	0	0	0	0	copy fasta	LIPI	chr21	14103813	14215955
LIPJ_chr10_88581762_88611976	0/1	c0001	1101	350	65	66	174	12	32	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	1/0	c0002	1101	23	1	8	0	6	7	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	c0003	1101	11	6	0	2	0	3	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	c0004	1101	9	8	1	0	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	c0005	1101	3	3	0	0	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	c0006	1101	3	0	0	3	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	c0007	1101	3	0	0	3	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	c0008	1101	2	2	0	0	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	c0009	1101	1	1	0	0	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	c0010	1101	1	0	0	0	0	1	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	c0011	1101	1	0	0	0	0	1	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	c0012	1101	1	1	0	0	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	c0013	1101	1	1	0	0	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPJ_chr10_88581762_88611976	0/0	c0014	1101	1	0	1	0	0	0	copy fasta	LIPJ	chr10	88581762	88611976
LIPK_chr10_88701249_88757776	1/1	c0001	1200	218	52	41	86	14	23	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	c0002	1200	76	1	12	54	2	7	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	c0003	1200	18	17	0	1	0	0	copy fasta	LIPK	chr10	88701249	88757776