JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LIPK_chr10_88701249_88757776	0/0	c0004	1200	17	15	2	0	0	0	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	c0005	1200	5	0	1	4	0	0	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	c0006	1200	3	0	0	3	0	0	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	c0007	1200	2	0	0	0	0	2	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	c0008	1200	2	0	0	1	0	1	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	c0009	1200	2	2	0	0	0	0	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	c0010	1200	1	0	0	0	0	1	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	c0011	1200	1	0	0	1	0	0	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	c0012	1200	1	0	0	1	0	0	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	c0013	1200	1	0	0	0	0	1	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	c0014	1200	1	0	0	0	0	1	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	c0015	1200	1	1	0	0	0	0	copy fasta	LIPK	chr10	88701249	88757776
LIPK_chr10_88701249_88757776	0/0	c0016	1200	1	0	0	1	0	0	copy fasta	LIPK	chr10	88701249	88757776
LIPM_chr10_88797730_88825546	1/1	c0001	1272	256	56	49	113	14	22	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	c0002	1272	144	9	20	92	3	20	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	c0003	1272	19	0	5	13	0	1	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	c0004	1272	12	10	2	0	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	c0005	1272	8	8	0	0	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	c0006	1272	5	5	0	0	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	c0007	1272	5	4	1	0	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	c0008	1272	4	0	1	0	1	2	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	c0009	1272	1	0	0	1	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	c0010	1272	1	0	0	1	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	c0011	1272	1	1	0	0	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	c0012	1272	1	1	0	0	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	c0013	1272	1	0	0	1	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	c0014	1272	1	1	0	0	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	c0015	1272	1	1	0	0	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	c0016	1272	1	0	0	0	0	1	copy fasta	LIPM	chr10	88797730	88825546
LIPM_chr10_88797730_88825546	0/0	c0017	1272	1	0	0	1	0	0	copy fasta	LIPM	chr10	88797730	88825546
LIPN_chr10_88755020_88784626	0/0	c0001	1197	148	33	24	60	8	23	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	1/1	c0002	1197	86	32	26	14	4	8	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	c0003	1197	56	0	8	40	0	8	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	c0004	1197	26	13	6	4	2	1	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	c0005	1197	22	0	1	20	0	1	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	c0006	1197	21	3	1	17	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	c0007	1197	17	0	7	10	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	c0008	1197	9	9	0	0	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	c0009	1197	3	0	0	2	0	1	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	c0010	1197	2	0	0	0	2	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	c0011	1197	2	1	1	0	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	c0012	1197	1	1	0	0	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPN_chr10_88755020_88784626	0/0	c0013	1197	1	0	0	1	0	0	copy fasta	LIPN	chr10	88755020	88784626
LIPT1_chr2_99149967_99168137	0/0	c0001	1122	178	20	36	90	9	23	copy fasta	LIPT1	chr2	99149967	99168137
LIPT1_chr2_99149967_99168137	1/1	c0002	1122	147	52	32	32	6	23	copy fasta	LIPT1	chr2	99149967	99168137
LIPT1_chr2_99149967_99168137	0/0	c0003	1122	73	16	9	46	1	1	copy fasta	LIPT1	chr2	99149967	99168137
LIPT1_chr2_99149967_99168137	0/0	c0004	1122	2	0	0	2	0	0	copy fasta	LIPT1	chr2	99149967	99168137
LIPT1_chr2_99149967_99168137	0/0	c0005	1122	2	0	0	2	0	0	copy fasta	LIPT1	chr2	99149967	99168137
LIPT1_chr2_99149967_99168137	0/0	c0006	1122	1	1	0	0	0	0	copy fasta	LIPT1	chr2	99149967	99168137
LIPT1_chr2_99149967_99168137	0/0	c0007	1122	1	0	0	0	0	1	copy fasta	LIPT1	chr2	99149967	99168137