JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LLGL1_chr17_18220635_18249875	0/0	c0007	3195	2	0	2	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	c0008	3195	1	1	0	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	c0009	3195	1	1	0	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	c0010	3195	1	1	0	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	c0011	3195	1	0	1	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	c0012	3195	1	1	0	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	c0013	3195	1	1	0	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	c0014	3195	1	0	1	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	c0015	3195	1	1	0	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	c0016	3195	1	1	0	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	c0017	3195	1	0	1	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	c0018	3195	1	1	0	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	c0019	3195	1	0	0	1	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	c0020	3195	1	1	0	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL1_chr17_18220635_18249875	0/0	c0021	3195	1	1	0	0	0	0	copy fasta	LLGL1	chr17	18220635	18249875
LLGL2_chr17_75520697_75580209	0/0	c0001	3063	119	6	22	65	6	20	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	1/0	c0002	3063	69	2	17	42	2	5	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/1	c0003	3063	40	3	11	19	3	3	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0004	3063	33	18	11	0	2	2	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0005	3063	25	7	3	13	0	2	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0006	3063	14	14	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0007	3063	8	6	1	0	0	1	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0008	3063	5	0	5	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0009	3063	4	0	1	3	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0010	3063	4	0	0	4	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0011	3063	3	3	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0012	3063	3	0	0	0	0	3	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0013	3063	3	1	0	0	1	1	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0014	3063	2	2	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0015	3063	2	2	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0016	3063	2	2	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0017	3063	2	2	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0018	3063	2	2	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0019	3063	2	2	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0020	3063	2	2	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0021	3063	2	0	1	1	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0022	3063	2	2	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0023	3063	1	0	0	0	0	1	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0024	3063	1	0	0	1	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0025	3063	1	0	0	1	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0026	3080	1	0	0	1	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0027	3063	1	0	1	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0028	3063	1	1	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0029	3063	1	0	0	1	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0030	3063	1	0	0	0	1	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0031	3063	1	0	1	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0032	3063	1	1	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0033	3063	1	0	0	0	0	1	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0034	3063	1	0	0	0	0	1	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0035	3063	1	1	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209