JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LLGL2_chr17_75520697_75580209	0/0	c0036	3063	1	0	1	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0037	3063	1	0	0	0	1	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0038	3063	1	0	1	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0039	3063	1	1	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0040	3063	1	1	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0041	3063	1	1	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0042	3063	1	0	1	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0043	3063	1	1	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0044	3063	1	1	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0045	3063	1	0	0	0	0	1	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0046	3063	1	0	1	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0047	3063	1	0	1	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0048	3063	1	1	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0049	3063	1	1	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0050	3063	1	1	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0051	3063	1	0	0	1	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0052	3063	1	0	0	1	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0053	3063	1	0	1	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0054	3063	1	0	0	1	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0055	3063	1	1	0	0	0	0	copy fasta	LLGL2	chr17	75520697	75580209
LLGL2_chr17_75520697_75580209	0/0	c0056	3063	1	0	0	0	0	1	copy fasta	LLGL2	chr17	75520697	75580209
LLPH_chr12_66111555_66135750	1/1	c0001	390	347	69	56	154	18	48	copy fasta	LLPH	chr12	66111555	66135750
LLPH_chr12_66111555_66135750	0/0	c0002	390	17	17	0	0	0	0	copy fasta	LLPH	chr12	66111555	66135750
LMAN1L_chr15_74807835_74830754	1/1	c0001	1581	293	54	47	155	15	20	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	c0002	1581	58	4	8	31	3	12	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	c0003	1581	19	17	2	0	0	0	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	c0004	1581	11	1	6	0	0	4	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	c0005	1581	10	10	0	0	0	0	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	c0006	1581	3	3	0	0	0	0	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	c0007	1581	3	0	0	0	0	3	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	c0008	1581	2	0	0	2	0	0	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	c0009	1581	2	2	0	0	0	0	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	c0010	1581	2	2	0	0	0	0	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	c0011	1581	1	0	0	0	0	1	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	c0012	1581	1	1	0	0	0	0	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	c0013	1581	1	0	0	1	0	0	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	c0014	1581	1	0	0	1	0	0	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1L_chr15_74807835_74830754	0/0	c0015	1581	1	0	1	0	0	0	copy fasta	LMAN1L	chr15	74807835	74830754
LMAN1_chr18_59322823_59364265	1/0	c0001	1533	291	58	48	153	8	23	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	c0002	1533	44	1	11	28	2	2	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/1	c0003	1533	20	1	13	2	0	3	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	c0004	1533	18	11	3	0	2	2	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	c0005	1533	5	5	0	0	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	c0006	1533	3	0	1	0	1	1	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	c0007	1533	1	0	0	0	1	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	c0008	1533	1	0	0	1	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	c0009	1533	1	1	0	0	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	c0010	1533	1	1	0	0	0	0	copy fasta	LMAN1	chr18	59322823	59364265
LMAN1_chr18_59322823_59364265	0/0	c0011	1516	1	0	0	0	0	1	copy fasta	LMAN1	chr18	59322823	59364265
LMAN2L_chr2_96700929_96745064	1/1	c0001	1047	265	84	52	95	14	18	copy fasta	LMAN2L	chr2	96700929	96745064