JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LMAN2L_chr2_96700929_96745064	0/0	c0002	1047	1	0	0	1	0	0	copy fasta	LMAN2L	chr2	96700929	96745064
LMAN2L_chr2_96700929_96745064	0/0	c0003	1047	1	0	1	0	0	0	copy fasta	LMAN2L	chr2	96700929	96745064
LMAN2L_chr2_96700929_96745064	0/0	c0004	1047	1	0	1	0	0	0	copy fasta	LMAN2L	chr2	96700929	96745064
LMAN2_chr5_177326567_177356668	1/1	c0001	1071	363	94	69	143	15	40	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	c0002	1071	5	0	0	5	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	c0003	1071	1	1	0	0	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	c0004	1071	1	1	0	0	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	c0005	1071	1	1	0	0	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	c0006	1071	1	0	0	0	1	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	c0007	1071	1	1	0	0	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	c0008	1071	1	1	0	0	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	c0009	1071	1	0	1	0	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMAN2_chr5_177326567_177356668	0/0	c0010	1071	1	1	0	0	0	0	copy fasta	LMAN2	chr5	177326567	177356668
LMBR1L_chr12_49092139_49115847	1/0	c0001	1470	357	94	47	174	10	31	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/1	c0002	1470	10	0	6	0	2	1	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	c0003	1470	5	0	0	0	0	5	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	c0004	1470	2	2	0	0	0	0	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	c0005	1470	2	0	1	1	0	0	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	c0006	1470	1	0	0	0	0	1	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	c0007	1470	1	0	0	1	0	0	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	c0008	1507	1	0	0	1	0	0	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1L_chr12_49092139_49115847	0/0	c0009	1470	1	0	0	1	0	0	copy fasta	LMBR1L	chr12	49092139	49115847
LMBR1_chr7_156672791_156898183	1/0	c0001	1473	248	55	48	107	11	26	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/1	c0002	1473	43	3	4	33	1	1	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	c0003	1473	9	8	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	c0004	1473	6	4	1	0	0	1	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	c0005	1473	5	0	1	0	0	4	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	c0006	1473	2	2	0	0	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBR1_chr7_156672791_156898183	0/0	c0007	1473	1	0	0	1	0	0	copy fasta	LMBR1	chr7	156672791	156898183
LMBRD1_chr6_69669010_69802010	1/1	c0001	1623	220	68	41	84	6	19	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	c0002	1623	121	11	29	58	8	15	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	c0003	1623	3	3	0	0	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	c0004	1623	1	0	0	1	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	c0005	1623	1	1	0	0	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	c0006	1623	1	0	0	1	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD1_chr6_69669010_69802010	0/0	c0007	1623	1	1	0	0	0	0	copy fasta	LMBRD1	chr6	69669010	69802010
LMBRD2_chr5_36093407_36156887	1/0	c0001	2088	246	45	41	124	8	27	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/1	c0002	2088	68	1	14	39	6	7	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	c0003	2088	18	15	3	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	c0004	2088	10	9	1	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	c0005	2088	8	7	1	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	c0006	2088	4	4	0	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	c0007	2088	3	3	0	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	c0008	2088	2	0	0	0	0	2	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	c0009	2088	1	1	0	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	c0010	2088	1	0	0	1	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMBRD2_chr5_36093407_36156887	0/0	c0011	2088	1	1	0	0	0	0	copy fasta	LMBRD2	chr5	36093407	36156887
LMCD1_chr3_8496823_8579668	1/0	c0001	1098	266	67	56	102	13	27	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/1	c0002	1098	36	10	7	8	1	9	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	c0003	1098	2	0	1	0	0	1	copy fasta	LMCD1	chr3	8496823	8579668