JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LMCD1_chr3_8496823_8579668	0/0	c0004	1098	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	c0005	1098	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	c0006	1098	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	c0007	1098	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	c0008	1098	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	c0009	1098	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	c0010	1098	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	c0011	1098	1	1	0	0	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	c0012	1098	1	0	0	1	0	0	copy fasta	LMCD1	chr3	8496823	8579668
LMCD1_chr3_8496823_8579668	0/0	c0013	1098	1	0	0	0	0	1	copy fasta	LMCD1	chr3	8496823	8579668
LMF1_chr16_848634_975984	1/0	c0001	1704	94	4	25	40	7	17	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/1	c0002	1704	29	10	0	12	0	6	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0003	1704	15	3	0	10	1	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0004	1704	13	4	1	6	0	2	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0005	1704	12	3	4	3	2	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0006	1704	10	7	2	0	0	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0007	1704	8	1	0	6	0	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0008	1704	7	0	1	4	0	2	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0009	1704	6	0	3	0	3	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0010	1704	6	0	4	0	1	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0011	1704	6	0	0	6	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0012	1704	6	2	2	2	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0013	1704	6	0	4	1	0	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0014	1704	4	0	0	2	1	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0015	1704	3	0	0	3	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0016	1704	3	0	0	3	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0017	1704	3	0	3	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0018	1704	3	1	1	1	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0019	1704	2	2	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0020	1704	2	2	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0021	1704	2	2	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0022	1704	2	2	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0023	1704	2	2	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0024	1704	2	2	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0025	1704	2	2	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0026	1704	2	2	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0027	1704	2	2	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0028	1704	2	0	2	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0029	1704	2	1	0	0	0	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0030	1704	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0031	1704	1	0	1	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0032	1704	1	0	0	0	0	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0033	1704	1	0	0	0	0	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0034	1704	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0035	1704	1	0	1	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0036	1704	1	0	0	0	0	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0037	1704	1	0	1	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0038	1704	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0039	1704	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0040	1704	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984