JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LMF1_chr16_848634_975984	0/0	c0041	1704	1	0	0	1	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0042	1704	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0043	1704	1	0	0	0	0	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0044	1704	1	0	0	0	0	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0045	1704	1	0	0	0	1	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0046	1704	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0047	1704	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0048	1704	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0049	1704	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0050	1704	1	0	1	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0051	1704	1	0	0	1	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0052	1704	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0053	1704	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0054	1704	1	0	1	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0055	1704	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0056	1704	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0057	1704	1	0	1	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0058	1704	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0059	1704	1	0	0	0	0	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0060	1704	1	1	0	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0061	1704	1	0	1	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0062	1704	1	0	1	0	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0063	1704	1	0	0	0	0	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0064	1704	1	0	0	0	0	1	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0065	1704	1	0	0	1	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0066	1704	1	0	0	1	0	0	copy fasta	LMF1	chr16	848634	975984
LMF1_chr16_848634_975984	0/0	c0067	1704	1	0	0	1	0	0	copy fasta	LMF1	chr16	848634	975984
LMF2_chr22_50497949_50512702	0/0	c0001	2124	125	10	28	80	3	4	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/1	c0002	2124	60	15	9	27	1	7	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0003	2124	45	6	7	24	0	8	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0004	2124	24	6	7	5	1	5	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0005	2124	19	0	9	0	6	4	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0006	2124	18	16	2	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0007	2124	16	0	8	0	3	5	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0008	2124	11	1	4	2	2	2	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0009	2124	9	6	1	1	0	1	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0010	2124	8	0	0	8	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0011	2124	7	5	2	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0012	2124	6	0	0	5	0	1	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0013	2124	6	3	1	0	0	2	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0014	2124	5	4	1	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0015	2124	4	3	1	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0016	2124	4	0	1	3	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0017	2124	4	0	0	4	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0018	2124	3	3	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	1/0	c0019	2124	3	0	0	0	2	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0020	2124	3	0	3	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0021	2124	2	1	1	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0022	2124	2	2	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0023	2124	2	0	0	2	0	0	copy fasta	LMF2	chr22	50497949	50512702