JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKDD1B_chr5_75606453_75676846	0/0	c0036	1587	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0037	1587	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0038	1587	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKDD1B_chr5_75606453_75676846	0/0	c0039	1587	1	1	0	0	0	0	copy fasta	ANKDD1B	chr5	75606453	75676846
ANKEF1_chr20_10029987_10063303	1/0	c0001	2331	176	18	35	102	6	14	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0002	2331	130	38	24	53	5	10	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0003	2331	47	22	10	0	3	12	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/1	c0004	2331	15	3	7	0	2	2	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0005	2331	3	3	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0006	2331	3	0	0	3	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0007	2331	2	0	1	0	0	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0008	2331	2	0	0	0	2	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0009	2331	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0010	2331	1	0	0	1	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0011	2331	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0012	2331	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0013	2331	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0014	2331	1	0	0	1	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0015	2331	1	0	1	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0016	2331	1	0	0	0	0	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0017	2331	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0018	2331	1	0	0	0	0	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0019	2331	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0020	2331	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0021	2331	1	1	0	0	0	0	copy fasta	ANKEF1	chr20	10029987	10063303
ANKEF1_chr20_10029987_10063303	0/0	c0022	2331	1	0	0	0	0	1	copy fasta	ANKEF1	chr20	10029987	10063303
ANKFN1_chr17_56148475_56522016	0/1	c0001	3441	24	4	3	11	1	4	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	1/0	c0002	3441	23	10	4	2	1	5	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0003	3441	7	6	1	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0004	3441	7	6	0	1	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0005	3441	7	6	0	0	0	1	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0006	3441	5	2	2	1	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0007	3441	4	4	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0008	3441	3	3	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0009	3441	3	0	0	3	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0010	3441	3	3	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0011	3441	2	2	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0012	3441	2	2	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0013	3441	2	2	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0014	3441	2	2	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0015	3441	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0016	3441	1	0	1	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0017	3441	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0018	3441	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0019	3441	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0020	3441	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0021	3441	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0022	3441	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0023	3441	1	0	0	1	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0024	3441	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016