JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LMF2_chr22_50497949_50512702	0/0	c0024	2124	2	0	0	0	0	2	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0025	2124	2	2	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0026	2124	2	2	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0027	2124	1	1	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0028	2124	1	1	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0029	2124	1	0	0	0	0	1	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0030	2124	1	1	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0031	2124	1	1	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0032	2124	1	1	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0033	2124	1	1	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0034	2124	1	1	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0035	2124	1	0	1	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0036	2124	1	0	0	0	0	1	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0037	2124	1	0	0	0	0	1	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0038	2124	1	0	0	1	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0039	2124	1	0	0	1	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0040	2124	1	0	0	1	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0041	2124	1	0	0	1	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0042	2124	1	1	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0043	2124	1	1	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0044	2124	1	0	0	1	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0045	2124	1	0	0	1	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0046	2124	1	1	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0047	2124	1	1	0	0	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMF2_chr22_50497949_50512702	0/0	c0048	2124	1	0	0	1	0	0	copy fasta	LMF2	chr22	50497949	50512702
LMLN_chr3_197955217_198048720	1/1	c0001	2055	183	40	34	76	6	25	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	c0002	2055	68	43	11	2	2	10	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	c0003	2055	2	0	2	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	c0004	2055	2	0	1	1	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	c0005	2055	1	0	0	1	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	c0006	2055	1	1	0	0	0	0	copy fasta	LMLN	chr3	197955217	198048720
LMLN_chr3_197955217_198048720	0/0	c0007	2055	1	0	0	0	0	1	copy fasta	LMLN	chr3	197955217	198048720
LMNA_chr1_156109711_156142866	1/0	c0001	1719	132	12	36	64	4	15	copy fasta	LMNA	chr1	156109711	156142866
LMNA_chr1_156109711_156142866	0/1	c0002	1719	64	6	19	28	2	8	copy fasta	LMNA	chr1	156109711	156142866
LMNA_chr1_156109711_156142866	0/0	c0003	1719	63	46	6	4	0	7	copy fasta	LMNA	chr1	156109711	156142866
LMNA_chr1_156109711_156142866	0/0	c0004	1719	21	21	0	0	0	0	copy fasta	LMNA	chr1	156109711	156142866
LMNA_chr1_156109711_156142866	0/0	c0005	1719	1	1	0	0	0	0	copy fasta	LMNA	chr1	156109711	156142866
LMNA_chr1_156109711_156142866	0/0	c0006	1719	1	0	1	0	0	0	copy fasta	LMNA	chr1	156109711	156142866
LMNA_chr1_156109711_156142866	0/0	c0007	1719	1	0	0	1	0	0	copy fasta	LMNA	chr1	156109711	156142866
LMNA_chr1_156109711_156142866	0/0	c0008	1719	1	0	0	1	0	0	copy fasta	LMNA	chr1	156109711	156142866
LMNA_chr1_156109711_156142866	0/0	c0009	1719	1	0	1	0	0	0	copy fasta	LMNA	chr1	156109711	156142866
LMNA_chr1_156109711_156142866	0/0	c0010	1719	1	0	1	0	0	0	copy fasta	LMNA	chr1	156109711	156142866
LMNA_chr1_156109711_156145081	1/0	c0001	1995	128	12	33	64	3	15	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/1	c0002	1995	67	6	18	29	1	12	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	c0003	1995	63	46	6	4	0	7	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	c0004	1995	21	21	0	0	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	c0005	1995	1	1	0	0	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	c0006	1995	1	0	1	0	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	c0007	1995	1	0	0	1	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	c0008	1995	1	0	0	1	0	0	copy fasta	LMNA	chr1	156109711	156145081