JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LMNA_chr1_156109711_156145081	0/0	c0009	1995	1	0	1	0	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	c0010	1995	1	0	0	1	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNA_chr1_156109711_156145081	0/0	c0011	1995	1	0	1	0	0	0	copy fasta	LMNA	chr1	156109711	156145081
LMNB1_chr5_126772136_126842020	1/1	c0001	1761	332	65	62	158	10	35	copy fasta	LMNB1	chr5	126772136	126842020
LMNB1_chr5_126772136_126842020	0/0	c0002	1761	14	1	1	7	1	4	copy fasta	LMNB1	chr5	126772136	126842020
LMNB1_chr5_126772136_126842020	0/0	c0003	1761	11	10	1	0	0	0	copy fasta	LMNB1	chr5	126772136	126842020
LMNB1_chr5_126772136_126842020	0/0	c0004	1761	9	4	4	0	1	0	copy fasta	LMNB1	chr5	126772136	126842020
LMNB1_chr5_126772136_126842020	0/0	c0005	1761	3	1	2	0	0	0	copy fasta	LMNB1	chr5	126772136	126842020
LMNB1_chr5_126772136_126842020	0/0	c0006	1761	2	2	0	0	0	0	copy fasta	LMNB1	chr5	126772136	126842020
LMNB1_chr5_126772136_126842020	0/0	c0007	1761	1	0	0	1	0	0	copy fasta	LMNB1	chr5	126772136	126842020
LMNB1_chr5_126772136_126842020	0/0	c0008	1761	1	1	0	0	0	0	copy fasta	LMNB1	chr5	126772136	126842020
LMNB1_chr5_126772136_126842020	0/0	c0009	1761	1	0	0	0	0	1	copy fasta	LMNB1	chr5	126772136	126842020
LMNB2_chr19_2423166_2461959	0/0	c0001	1863	221	66	40	84	7	24	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	1/1	c0002	1863	101	7	22	43	6	21	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	c0003	1863	11	0	0	10	0	1	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	c0004	1863	11	11	0	0	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	c0005	1863	1	1	0	0	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	c0006	1863	1	0	0	1	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	c0007	1863	1	0	0	0	1	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	c0008	1863	1	0	0	1	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	c0009	1863	1	0	0	1	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	c0010	1863	1	1	0	0	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	c0011	1863	1	0	0	1	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	c0012	1863	1	1	0	0	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	c0013	1863	1	1	0	0	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	c0014	1863	1	0	0	1	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	c0015	1863	1	0	0	1	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNB2_chr19_2423166_2461959	0/0	c0016	1863	1	0	0	1	0	0	copy fasta	LMNB2	chr19	2423166	2461959
LMNTD1_chr12_25471082_25558283	0/1	c0001	1230	280	39	55	150	8	27	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	1/0	c0002	1230	78	34	15	12	2	14	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	c0003	1230	8	1	3	1	2	1	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	c0004	1230	5	0	0	5	0	0	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	c0005	1230	4	4	0	0	0	0	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	c0006	1230	3	0	2	0	0	1	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	c0007	1230	2	2	0	0	0	0	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	c0008	1230	1	0	1	0	0	0	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	c0009	1230	1	0	0	1	0	0	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	c0010	1230	1	0	0	1	0	0	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	c0011	1230	1	0	0	0	0	1	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	c0012	1230	1	1	0	0	0	0	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	c0013	1230	1	1	0	0	0	0	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	c0014	1230	1	1	0	0	0	0	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD1_chr12_25471082_25558283	0/0	c0015	1230	1	1	0	0	0	0	copy fasta	LMNTD1	chr12	25471082	25558283
LMNTD2_chr11_549850_565738	0/0	c0001	1905	142	12	26	76	7	21	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/1	c0002	1905	108	38	23	35	2	9	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0003	1905	41	18	6	10	1	6	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0004	1905	19	2	5	9	1	2	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0005	1905	16	0	7	3	4	2	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0006	1905	7	0	0	7	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0007	1905	7	7	0	0	0	0	copy fasta	LMNTD2	chr11	549850	565738