JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LMNTD2_chr11_549850_565738	0/0	c0008	1905	7	2	4	0	0	1	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0009	1905	5	5	0	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0010	1905	4	0	4	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0011	1905	4	1	3	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0012	1905	4	4	0	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0013	1905	3	0	0	3	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0014	1905	3	3	0	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0015	1905	3	2	1	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0016	1905	2	1	1	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0017	1905	1	0	0	0	1	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0018	1905	1	0	0	0	0	1	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0019	1905	1	0	1	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0020	1905	1	0	0	1	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0021	1905	1	0	0	1	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0022	1905	1	0	1	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0023	1905	1	0	0	1	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0024	1905	1	1	0	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0025	1905	1	1	0	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0026	1905	1	0	0	1	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0027	1905	1	0	0	1	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMNTD2_chr11_549850_565738	0/0	c0028	1905	1	1	0	0	0	0	copy fasta	LMNTD2	chr11	549850	565738
LMO1_chr11_8219309_8268878	1/1	c0001	471	260	62	42	129	7	18	copy fasta	LMO1	chr11	8219309	8268878
LMO1_chr11_8219309_8268878	0/0	c0002	471	99	4	28	44	4	19	copy fasta	LMO1	chr11	8219309	8268878
LMO1_chr11_8219309_8268878	0/0	c0003	471	56	32	8	8	1	7	copy fasta	LMO1	chr11	8219309	8268878
LMO1_chr11_8219309_8268878	0/0	c0004	471	4	0	0	4	0	0	copy fasta	LMO1	chr11	8219309	8268878
LMO1_chr11_8219309_8268878	0/0	c0005	471	3	0	0	0	0	3	copy fasta	LMO1	chr11	8219309	8268878
LMO1_chr11_8219309_8268878	0/0	c0006	471	1	0	0	1	0	0	copy fasta	LMO1	chr11	8219309	8268878
LMO1_chr11_8219309_8268878	0/0	c0007	471	1	0	0	0	0	1	copy fasta	LMO1	chr11	8219309	8268878
LMO2_chr11_33853576_33897076	0/1	c0001	684	209	32	46	91	10	29	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	c0002	684	178	57	21	80	4	16	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	1/0	c0003	684	31	0	1	29	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	c0004	684	13	7	4	0	0	2	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	c0005	684	6	0	6	0	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	c0006	684	1	1	0	0	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	c0007	684	1	1	0	0	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	c0008	684	1	0	0	0	0	1	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	c0009	684	1	0	0	1	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO2_chr11_33853576_33897076	0/0	c0010	684	1	0	0	1	0	0	copy fasta	LMO2	chr11	33853576	33897076
LMO3_chr12_16543372_16611162	1/1	c0001	438	353	82	60	165	12	32	copy fasta	LMO3	chr12	16543372	16611162
LMO3_chr12_16543372_16611162	0/0	c0002	438	1	0	0	1	0	0	copy fasta	LMO3	chr12	16543372	16611162
LMO4_chr1_87323880_87353923	1/1	c0001	498	378	84	78	159	9	46	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	c0002	498	12	12	0	0	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	c0003	498	1	0	0	1	0	0	copy fasta	LMO4	chr1	87323880	87353923
LMO4_chr1_87323880_87353923	0/0	c0004	498	1	0	0	0	1	0	copy fasta	LMO4	chr1	87323880	87353923
LMO7_chr13_75631330_75864866	0/1	c0001	4896	70	12	15	35	2	5	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0002	4896	43	0	11	29	1	2	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0003	4896	25	1	9	7	0	8	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0004	4896	19	3	4	10	1	1	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0005	4896	15	0	0	12	0	3	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0006	4896	14	10	3	0	1	0	copy fasta	LMO7	chr13	75631330	75864866