JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LMO7_chr13_75631330_75864866	0/0	c0007	4896	12	3	3	2	2	2	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0008	4896	10	4	1	2	0	3	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0009	4896	7	3	1	1	0	2	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0010	4896	6	5	1	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0011	4896	6	0	3	0	2	1	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0012	4896	5	4	1	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0013	4896	5	0	0	0	1	4	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0014	4896	4	2	2	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0015	4896	4	0	0	4	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0016	4896	3	3	0	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0017	4896	3	0	3	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0018	4896	3	3	0	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0019	4896	2	0	0	2	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0020	4896	2	0	0	2	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0021	4896	1	1	0	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0022	4896	1	0	0	1	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0023	4896	1	0	0	1	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0024	4896	1	0	0	1	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0025	4896	1	0	0	0	0	1	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0026	4896	1	0	0	1	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0027	4896	1	1	0	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0028	4896	1	0	1	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0029	4896	1	1	0	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0030	4896	1	1	0	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0031	4896	1	1	0	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	1/0	c0032	4896	1	0	0	0	0	0	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0033	4896	1	0	0	0	0	1	copy fasta	LMO7	chr13	75631330	75864866
LMO7_chr13_75631330_75864866	0/0	c0034	4896	1	0	0	0	0	1	copy fasta	LMO7	chr13	75631330	75864866
LMOD1_chr1_201891456_201951548	1/1	c0001	1803	325	67	60	149	12	35	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	c0002	1803	69	21	17	16	4	11	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	c0003	1803	3	2	1	0	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	c0004	1803	1	1	0	0	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	c0005	1803	1	0	0	1	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD1_chr1_201891456_201951548	0/0	c0006	1803	1	1	0	0	0	0	copy fasta	LMOD1	chr1	201891456	201951548
LMOD2_chr7_123650866_123669290	1/1	c0001	1644	206	54	39	88	7	16	copy fasta	LMOD2	chr7	123650866	123669290
LMOD2_chr7_123650866_123669290	0/0	c0002	1644	186	38	25	87	9	27	copy fasta	LMOD2	chr7	123650866	123669290
LMOD2_chr7_123650866_123669290	0/0	c0003	1644	1	0	1	0	0	0	copy fasta	LMOD2	chr7	123650866	123669290
LMOD2_chr7_123650866_123669290	0/0	c0004	1644	1	0	0	0	0	1	copy fasta	LMOD2	chr7	123650866	123669290
LMOD2_chr7_123650866_123669290	0/0	c0005	1644	1	0	1	0	0	0	copy fasta	LMOD2	chr7	123650866	123669290
LMOD2_chr7_123650866_123669290	0/0	c0006	1644	1	0	0	1	0	0	copy fasta	LMOD2	chr7	123650866	123669290
LMOD3_chr3_69101065_69127595	1/0	c0001	1683	311	62	47	153	14	34	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0002	1683	43	6	1	30	0	6	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0003	1683	29	5	6	18	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/1	c0004	1683	4	0	2	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0005	1683	4	4	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0006	1683	4	0	4	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0007	1683	4	4	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0008	1683	3	0	2	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0009	1683	3	3	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0010	1683	3	3	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595