JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LMOD3_chr3_69101065_69127595	0/0	c0011	1683	2	2	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0012	1683	2	2	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0013	1683	2	0	1	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0014	1683	2	0	0	2	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0015	1683	2	2	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0016	1683	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0017	1683	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0018	1683	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0019	1697	1	0	0	1	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0020	1683	1	0	0	0	0	1	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0021	1683	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0022	1683	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0023	1683	1	0	1	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0024	1683	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMOD3_chr3_69101065_69127595	0/0	c0025	1683	1	1	0	0	0	0	copy fasta	LMOD3	chr3	69101065	69127595
LMTK2_chr7_98101862_98214638	1/0	c0001	4512	163	31	22	79	4	26	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0002	4512	61	1	11	46	0	3	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/1	c0003	4512	48	3	20	17	3	4	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0004	4512	39	11	5	19	0	4	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0005	4512	10	9	1	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0006	4512	7	0	0	7	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0007	4512	7	7	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0008	4512	6	0	4	2	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0009	4512	5	5	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0010	4512	5	5	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0011	4512	3	3	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0012	4512	2	2	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0013	4512	2	2	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0014	4512	2	0	0	0	0	2	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0015	4512	2	0	0	2	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0016	4512	2	2	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0017	4512	2	2	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0018	4512	1	0	0	0	0	1	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0019	4512	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0020	4512	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0021	4512	1	0	0	0	1	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0022	4512	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0023	4512	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0024	4512	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0025	4512	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0026	4512	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0027	4512	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0028	4512	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0029	4512	1	0	1	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0030	4512	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0031	4512	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0032	4512	1	0	0	0	0	1	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0033	4512	1	0	0	1	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0034	4512	1	0	0	0	0	1	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0035	4512	1	0	1	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638