JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LMTK2_chr7_98101862_98214638	0/0	c0036	4512	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0037	4512	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0038	4512	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0039	4512	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0040	4512	1	1	0	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK2_chr7_98101862_98214638	0/0	c0041	4512	1	0	1	0	0	0	copy fasta	LMTK2	chr7	98101862	98214638
LMTK3_chr19_48480271_48516835	0/1	c0001	4384	131	31	28	55	4	12	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	1/0	c0002	4383	74	19	17	29	3	5	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0003	4385	24	7	2	5	1	9	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0004	4384	12	1	2	9	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0005	4384	7	1	0	2	1	3	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0006	4384	5	5	0	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0007	4384	5	0	0	5	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0008	4386	5	0	1	3	1	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0009	4385	4	0	2	2	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0010	4384	3	3	0	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0011	4384	3	3	0	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0012	4384	3	1	2	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0013	4384	2	0	2	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0014	4384	2	2	0	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0015	4385	2	2	0	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0016	4385	2	0	0	2	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0017	4384	2	0	0	2	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0018	4383	2	2	0	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0019	4383	2	2	0	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0020	4383	2	0	0	2	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0021	4383	2	2	0	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0022	4383	2	0	2	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0023	4384	1	0	0	1	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0024	4383	1	0	0	0	1	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0025	4383	1	0	0	1	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0026	4383	1	0	1	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0027	4385	1	0	0	1	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0028	4385	1	1	0	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0029	4384	1	0	0	1	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0030	4384	1	0	0	0	0	1	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0031	4384	1	1	0	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0032	4384	1	0	0	0	1	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0033	4384	1	1	0	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0034	4384	1	0	1	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0035	4383	1	0	1	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0036	4383	1	0	0	1	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0037	4383	1	0	1	0	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0038	4385	1	0	0	0	0	1	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0039	4384	1	0	0	1	0	0	copy fasta	LMTK3	chr19	48480271	48516835
LMTK3_chr19_48480271_48516835	0/0	c0040	4385	1	0	0	0	0	1	copy fasta	LMTK3	chr19	48480271	48516835
LMX1A_chr1_165196867_165361715	0/1	c0001	1149	129	39	27	39	5	18	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	c0002	1149	92	14	23	46	1	8	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	c0003	1149	58	25	8	14	2	9	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	c0004	1149	2	2	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715