JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LMX1A_chr1_165196867_165361715	1/0	c0005	1149	2	1	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	c0006	1149	2	2	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	c0007	1149	1	0	0	1	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	c0008	1149	1	0	0	0	0	1	copy fasta	LMX1A	chr1	165196867	165361715
LMX1A_chr1_165196867_165361715	0/0	c0009	1149	1	1	0	0	0	0	copy fasta	LMX1A	chr1	165196867	165361715
LMX1B_chr9_126608928_126706032	1/1	c0001	1209	166	33	30	72	7	22	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	c0002	1209	132	12	27	74	3	16	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	c0003	1209	15	13	2	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	c0004	1209	12	9	3	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	c0005	1209	6	6	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	c0006	1209	3	3	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	c0007	1209	2	2	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	c0008	1209	2	2	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	c0009	1209	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	c0010	1209	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	c0011	1209	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LMX1B_chr9_126608928_126706032	0/0	c0012	1209	1	1	0	0	0	0	copy fasta	LMX1B	chr9	126608928	126706032
LNP1_chr3_100396539_100461319	0/1	c0001	594	206	44	24	113	6	18	copy fasta	LNP1	chr3	100396539	100461319
LNP1_chr3_100396539_100461319	1/0	c0002	537	190	44	48	67	6	24	copy fasta	LNP1	chr3	100396539	100461319
LNP1_chr3_100396539_100461319	0/0	c0003	537	1	1	0	0	0	0	copy fasta	LNP1	chr3	100396539	100461319
LNP1_chr3_100396539_100461319	0/0	c0004	594	1	1	0	0	0	0	copy fasta	LNP1	chr3	100396539	100461319
LNPEP_chr5_96931080_97042513	1/0	c0001	3078	204	48	44	88	6	17	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	c0002	3078	71	11	6	44	1	9	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	c0003	3078	34	19	2	13	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	c0004	3078	17	0	7	0	6	4	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/1	c0005	3078	10	3	3	0	1	2	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	c0006	3078	3	0	0	3	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	c0007	3078	2	0	0	2	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	c0008	3078	2	0	0	0	0	2	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	c0009	3078	2	1	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	c0010	3078	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	c0011	3078	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	c0012	3078	1	0	0	0	0	1	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	c0013	3078	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	c0014	3078	1	0	1	0	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	c0015	3078	1	0	0	0	0	1	copy fasta	LNPEP	chr5	96931080	97042513
LNPEP_chr5_96931080_97042513	0/0	c0016	3078	1	0	0	1	0	0	copy fasta	LNPEP	chr5	96931080	97042513
LNPK_chr2_175918882_176007267	1/1	c0001	1287	358	77	68	161	13	37	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	c0002	1287	6	0	3	0	1	2	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	c0003	1287	1	1	0	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	c0004	1287	1	0	1	0	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	c0005	1287	1	0	0	1	0	0	copy fasta	LNPK	chr2	175918882	176007267
LNPK_chr2_175918882_176007267	0/0	c0006	1287	1	0	0	0	0	1	copy fasta	LNPK	chr2	175918882	176007267
LNX1_chr4_53454301_53596486	1/1	c0001	2187	339	85	59	147	11	35	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	c0002	2187	2	2	0	0	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	c0003	2187	2	0	0	2	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	c0004	2187	2	0	0	2	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	c0005	2187	1	0	0	1	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	c0006	2187	1	0	0	1	0	0	copy fasta	LNX1	chr4	53454301	53596486
LNX1_chr4_53454301_53596486	0/0	c0007	2187	1	0	0	0	0	1	copy fasta	LNX1	chr4	53454301	53596486