JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LOC101059948_chr19_49012968_49025549	0/0	c0009	1005	1	1	0	0	0	0	copy fasta	LOC101059948	chr19	49012968	49025549
LOC101059948_chr19_49012968_49025549	0/0	c0010	1005	1	0	0	0	0	1	copy fasta	LOC101059948	chr19	49012968	49025549
LOC101059948_chr19_49012968_49025549	0/0	c0011	1005	1	0	1	0	0	0	copy fasta	LOC101059948	chr19	49012968	49025549
LOC101059948_chr19_49012968_49025549	0/0	c0012	1005	1	0	0	1	0	0	copy fasta	LOC101059948	chr19	49012968	49025549
LOC102723971_chr9_135609183_135624893	1/1	c0001	546	320	60	70	152	13	23	copy fasta	LOC102723971	chr9	135609183	135624893
LOC102723971_chr9_135609183_135624893	0/0	c0002	546	62	20	10	16	4	12	copy fasta	LOC102723971	chr9	135609183	135624893
LOC102723971_chr9_135609183_135624893	0/0	c0003	546	53	9	3	31	1	9	copy fasta	LOC102723971	chr9	135609183	135624893
LOC102723971_chr9_135609183_135624893	0/0	c0004	546	8	1	1	6	0	0	copy fasta	LOC102723971	chr9	135609183	135624893
LOC102723971_chr9_135609183_135624893	0/0	c0005	546	1	1	0	0	0	0	copy fasta	LOC102723971	chr9	135609183	135624893
LOC102723971_chr9_135609183_135624893	0/0	c0006	546	1	1	0	0	0	0	copy fasta	LOC102723971	chr9	135609183	135624893
LOC102723971_chr9_135609183_135624893	0/0	c0007	546	1	0	1	0	0	0	copy fasta	LOC102723971	chr9	135609183	135624893
LOC102723971_chr9_135609183_135624893	0/0	c0008	546	1	1	0	0	0	0	copy fasta	LOC102723971	chr9	135609183	135624893
LOC102723971_chr9_135609183_135624893	0/0	c0009	546	1	1	0	0	0	0	copy fasta	LOC102723971	chr9	135609183	135624893
LOC102723971_chr9_135609183_135624893	0/0	c0010	546	1	0	1	0	0	0	copy fasta	LOC102723971	chr9	135609183	135624893
LOC102723971_chr9_135609183_135624893	0/0	c0011	546	1	0	0	1	0	0	copy fasta	LOC102723971	chr9	135609183	135624893
LOC102725191_chr7_12499441_12546270	0/0	c0001	772	121	32	26	53	4	6	copy fasta	LOC102725191	chr7	12499441	12546270
LOC102725191_chr7_12499441_12546270	1/1	c0002	771	119	10	15	69	3	20	copy fasta	LOC102725191	chr7	12499441	12546270
LOC102725191_chr7_12499441_12546270	0/0	c0003	771	103	44	24	27	4	4	copy fasta	LOC102725191	chr7	12499441	12546270
LOC102725191_chr7_12499441_12546270	0/0	c0004	771	70	4	10	40	5	11	copy fasta	LOC102725191	chr7	12499441	12546270
LOC102725191_chr7_12499441_12546270	0/0	c0005	771	2	2	0	0	0	0	copy fasta	LOC102725191	chr7	12499441	12546270
LOC102725191_chr7_12499441_12546270	0/0	c0006	771	1	1	0	0	0	0	copy fasta	LOC102725191	chr7	12499441	12546270
LOC102725191_chr7_12499441_12546270	0/0	c0007	772	1	0	0	0	0	1	copy fasta	LOC102725191	chr7	12499441	12546270
LOC102725191_chr7_12499441_12546270	0/0	c0008	772	1	0	0	1	0	0	copy fasta	LOC102725191	chr7	12499441	12546270
LOC102725191_chr7_12499441_12546270	0/0	c0009	771	1	1	0	0	0	0	copy fasta	LOC102725191	chr7	12499441	12546270
LOC102725191_chr7_12499441_12546270	0/0	c0010	771	1	1	0	0	0	0	copy fasta	LOC102725191	chr7	12499441	12546270
LOC102725191_chr7_12499441_12546270	0/0	c0011	771	1	1	0	0	0	0	copy fasta	LOC102725191	chr7	12499441	12546270
LOC102725191_chr7_12499441_12546270	0/0	c0012	771	1	0	1	0	0	0	copy fasta	LOC102725191	chr7	12499441	12546270
LOC112267897_chr13_63741741_63753176	0/1	c0001	414	334	46	64	171	12	40	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112267897_chr13_63741741_63753176	1/0	c0002	390	25	11	2	8	2	1	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112267897_chr13_63741741_63753176	0/0	c0003	390	18	1	4	8	1	4	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112267897_chr13_63741741_63753176	0/0	c0004	390	14	13	1	0	0	0	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112267897_chr13_63741741_63753176	0/0	c0005	306	10	10	0	0	0	0	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112267897_chr13_63741741_63753176	0/0	c0006	438	6	6	0	0	0	0	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112267897_chr13_63741741_63753176	0/0	c0007	330	5	1	2	2	0	0	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112267897_chr13_63741741_63753176	0/0	c0008	390	3	2	1	0	0	0	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112267897_chr13_63741741_63753176	0/0	c0009	414	1	0	0	0	1	0	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112267897_chr13_63741741_63753176	0/0	c0010	414	1	0	1	0	0	0	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112267897_chr13_63741741_63753176	0/0	c0011	414	1	0	1	0	0	0	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112267897_chr13_63741741_63753176	0/0	c0012	414	1	0	0	1	0	0	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112267897_chr13_63741741_63753176	0/0	c0013	414	1	0	0	1	0	0	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112267897_chr13_63741741_63753176	0/0	c0014	414	1	0	0	0	0	1	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112267897_chr13_63741741_63753176	0/0	c0015	414	1	0	0	1	0	0	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112267897_chr13_63741741_63753176	0/0	c0016	432	1	1	0	0	0	0	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112267897_chr13_63741741_63753176	0/0	c0017	282	1	1	0	0	0	0	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112267897_chr13_63741741_63753176	0/0	c0018	390	1	1	0	0	0	0	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112267897_chr13_63741741_63753176	0/0	c0019	426	1	1	0	0	0	0	copy fasta	LOC112267897	chr13	63741741	63753176
LOC112694756_chr16_30048151_30075414	1/1	c0001	420	329	80	58	143	12	34	copy fasta	LOC112694756	chr16	30048151	30075414
LOC112694756_chr16_30048151_30075414	0/0	c0002	420	1	0	0	1	0	0	copy fasta	LOC112694756	chr16	30048151	30075414
LOC112694756_chr16_30048151_30075414	0/0	c0003	420	1	0	0	1	0	0	copy fasta	LOC112694756	chr16	30048151	30075414
LOC112694756_chr16_30048151_30075414	0/0	c0004	420	1	0	0	1	0	0	copy fasta	LOC112694756	chr16	30048151	30075414