JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKFN1_chr17_56148475_56522016	0/0	c0025	3441	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0026	3441	1	0	1	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0027	3441	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0028	3441	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0029	3441	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0030	3441	1	0	0	1	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0031	3441	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFN1_chr17_56148475_56522016	0/0	c0032	3441	1	1	0	0	0	0	copy fasta	ANKFN1	chr17	56148475	56522016
ANKFY1_chr17_4158821_4268979	0/0	c0001	3510	189	27	39	97	9	17	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	1/1	c0002	3510	53	24	11	10	1	5	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	c0003	3510	21	15	6	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	c0004	3510	20	18	1	1	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	c0005	3510	5	4	1	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	c0006	3510	4	0	0	4	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	c0007	3510	3	0	0	3	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	c0008	3510	2	2	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	c0009	3510	1	1	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	c0010	3510	1	0	0	1	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKFY1_chr17_4158821_4268979	0/0	c0011	3510	1	1	0	0	0	0	copy fasta	ANKFY1	chr17	4158821	4268979
ANKHD1_chr5_140396833_140544849	1/1	c0001	7629	296	79	53	121	16	25	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	c0002	7629	5	0	0	5	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	c0003	7629	2	0	0	2	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	c0004	7629	2	2	0	0	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	c0005	7629	2	2	0	0	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	c0006	7629	2	0	0	0	0	2	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	c0007	7629	1	0	0	0	0	1	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	c0008	7629	1	1	0	0	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	c0009	7629	1	1	0	0	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	c0010	7629	1	0	0	0	1	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	c0011	7629	1	1	0	0	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	c0012	7629	1	0	0	0	0	1	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	c0013	7629	1	1	0	0	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	c0014	7629	1	0	0	0	1	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	c0015	7629	1	0	1	0	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	c0016	7629	1	1	0	0	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	c0017	7629	1	0	1	0	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	c0018	7629	1	0	0	0	0	1	copy fasta	ANKHD1	chr5	140396833	140544849
ANKHD1_chr5_140396833_140544849	0/0	c0019	7629	1	0	1	0	0	0	copy fasta	ANKHD1	chr5	140396833	140544849
ANKH_chr5_14699800_14876778	1/1	c0001	1479	171	62	29	60	2	16	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	c0002	1479	30	4	8	16	0	2	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	c0003	1479	18	3	7	0	0	8	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	c0004	1479	6	6	0	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	c0005	1479	2	2	0	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	c0006	1479	1	1	0	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	c0007	1479	1	1	0	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	c0008	1479	1	1	0	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	c0009	1479	1	1	0	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKH_chr5_14699800_14876778	0/0	c0010	1479	1	1	0	0	0	0	copy fasta	ANKH	chr5	14699800	14876778
ANKIB1_chr7_92240974_92406383	0/1	c0001	3270	110	14	21	59	5	10	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	1/0	c0002	3270	82	38	13	20	3	7	copy fasta	ANKIB1	chr7	92240974	92406383