JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LOC128706666_chr20_10408708_10439222	0/0	c0002	153	2	1	1	0	0	0	copy fasta	LOC128706666	chr20	10408708	10439222
LOC128706666_chr20_10408708_10439222	0/0	c0003	153	1	0	0	1	0	0	copy fasta	LOC128706666	chr20	10408708	10439222
LOC128854680_chr10_75100669_75114157	1/0	c0001	567	195	46	32	80	6	30	copy fasta	LOC128854680	chr10	75100669	75114157
LOC128854680_chr10_75100669_75114157	0/1	c0002	567	190	45	39	91	5	9	copy fasta	LOC128854680	chr10	75100669	75114157
LOC128854680_chr10_75100669_75114157	0/0	c0003	567	5	0	1	0	3	1	copy fasta	LOC128854680	chr10	75100669	75114157
LOC128854680_chr10_75100669_75114157	0/0	c0004	567	3	2	1	0	0	0	copy fasta	LOC128854680	chr10	75100669	75114157
LOC128854680_chr10_75100669_75114157	0/0	c0005	567	2	0	2	0	0	0	copy fasta	LOC128854680	chr10	75100669	75114157
LOC128854680_chr10_75100669_75114157	0/0	c0006	567	2	2	0	0	0	0	copy fasta	LOC128854680	chr10	75100669	75114157
LOC128854680_chr10_75100669_75114157	0/0	c0007	567	1	0	0	1	0	0	copy fasta	LOC128854680	chr10	75100669	75114157
LOC128854680_chr10_75100669_75114157	0/0	c0008	567	1	0	1	0	0	0	copy fasta	LOC128854680	chr10	75100669	75114157
LOC128854680_chr10_75100669_75114157	0/0	c0009	567	1	0	0	1	0	0	copy fasta	LOC128854680	chr10	75100669	75114157
LOC128854680_chr10_75100669_75114157	0/0	c0010	567	1	1	0	0	0	0	copy fasta	LOC128854680	chr10	75100669	75114157
LOC128854680_chr10_75100669_75114157	0/0	c0011	567	1	0	0	1	0	0	copy fasta	LOC128854680	chr10	75100669	75114157
LOC400499_chr16_11367015_11532247	0/0	c0001	9963	4	0	0	4	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0002	9963	4	0	0	4	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	1/0	c0003	9963	3	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0004	9963	3	0	0	3	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0005	9963	3	0	3	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/1	c0006	9963	3	0	1	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0007	9963	3	0	1	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0008	9963	2	2	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0009	9963	2	0	0	0	2	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0010	9963	2	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0011	9963	2	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0012	9963	2	0	2	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0013	9963	2	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0014	9963	2	0	0	1	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0015	9963	2	0	2	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0016	9963	2	0	1	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0017	9963	2	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0018	9963	2	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0019	9963	2	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0020	9963	2	0	2	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0021	9963	2	2	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0022	9963	2	0	2	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0023	9963	2	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0024	9963	2	0	0	1	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0025	9963	2	2	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0026	9963	2	0	2	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0027	9963	2	0	1	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0028	9963	2	0	1	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0029	9963	2	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0030	9963	2	0	0	2	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0031	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0032	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0033	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0034	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0035	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0036	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0037	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247