JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
LOC400499_chr16_11367015_11532247	0/0	c0038	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0039	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0040	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0041	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0042	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0043	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0044	9963	1	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0045	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0046	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0047	9963	1	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0048	9963	1	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0049	9963	1	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0050	9963	1	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0051	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0052	9963	1	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0053	9963	1	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0054	9963	1	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0055	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0056	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0057	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0058	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0059	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0060	9963	1	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0061	9963	1	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0062	9963	1	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0063	9963	1	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0064	9963	1	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0065	9963	1	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0066	9963	1	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0067	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0068	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0069	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0070	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0071	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0072	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0073	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0074	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0075	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0076	9963	1	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0077	9963	1	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0078	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0079	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0080	9963	1	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0081	9963	1	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0082	9963	1	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0083	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0084	9963	1	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0085	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0086	9963	1	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0087	9963	1	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247