JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LOC400499_chr16_11367015_11532247	0/0	c0138	9963	1	0	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0139	9963	1	0	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0140	9963	1	0	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0141	9963	1	0	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0142	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0143	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0144	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0145	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0146	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0147	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0148	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0149	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0150	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0151	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0152	9963	1	0	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0153	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0154	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0155	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0156	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0157	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0158	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0159	9963	1	0	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0160	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0161	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0162	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0163	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0164	9963	1	0	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0165	9963	1	0	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0166	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0167	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0168	9963	1	0	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0169	9963	1	0	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0170	9963	1	0	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0171	9963	1	0	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0172	9963	1	0	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0173	9963	1	0	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0174	9963	1	0	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0175	9963	1	0	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0176	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0177	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0178	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0179	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0180	9963	1	0	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0181	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0182	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0183	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0184	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0185	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0186	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0187	9963	1	0	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247