JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LOC400499_chr16_11367015_11532247	0/0	c0238	9963	1	0	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0239	9963	1	0	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0240	9963	1	0	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0241	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0242	9963	1	0	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0243	9963	1	0	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0244	9963	1	0	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0245	9963	1	0	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0246	9963	1	0	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0247	9963	1	0	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0248	9963	1	0	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0249	9963	1	0	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0250	9963	1	0	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0251	9963	1	0	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0252	9963	1	0	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0253	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0254	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0255	9963	1	0	0	0	1	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0256	9963	1	0	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0257	9963	1	0	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0258	9963	1	0	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0259	9963	1	0	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0260	9963	1	0	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0261	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0262	9963	1	0	1	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0263	9963	1	0	0	0	0	1	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0264	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0265	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0266	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0267	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0268	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0269	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0270	9963	1	1	0	0	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC400499_chr16_11367015_11532247	0/0	c0271	9963	1	0	0	1	0	0	copy fasta	LOC400499	chr16	11367015	11532247
LOC647264_chr13_63827361_63838053	1/1	c0001	330	400	60	77	195	18	48	copy fasta	LOC647264	chr13	63827361	63838053
LOC647264_chr13_63827361_63838053	0/0	c0002	306	14	11	3	0	0	0	copy fasta	LOC647264	chr13	63827361	63838053
LOC647264_chr13_63827361_63838053	0/0	c0003	306	10	10	0	0	0	0	copy fasta	LOC647264	chr13	63827361	63838053
LOC647264_chr13_63827361_63838053	0/0	c0004	330	7	5	2	0	0	0	copy fasta	LOC647264	chr13	63827361	63838053
LOC647264_chr13_63827361_63838053	0/0	c0005	378	5	5	0	0	0	0	copy fasta	LOC647264	chr13	63827361	63838053
LOC647264_chr13_63827361_63838053	0/0	c0006	282	2	2	0	0	0	0	copy fasta	LOC647264	chr13	63827361	63838053
LOC647264_chr13_63827361_63838053	0/0	c0007	330	1	1	0	0	0	0	copy fasta	LOC647264	chr13	63827361	63838053
LOC647264_chr13_63827361_63838053	0/0	c0008	306	1	1	0	0	0	0	copy fasta	LOC647264	chr13	63827361	63838053
LOC647264_chr13_63827361_63838053	0/0	c0009	414	1	0	0	1	0	0	copy fasta	LOC647264	chr13	63827361	63838053
LOC647264_chr13_63827361_63838053	0/0	c0010	306	1	1	0	0	0	0	copy fasta	LOC647264	chr13	63827361	63838053
LOC728392_chr17_5494427_5506006	1/0	c0001	360	213	17	53	106	10	26	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	c0002	360	75	23	6	40	0	6	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	c0003	360	57	29	7	16	2	3	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	c0004	360	45	12	0	30	0	3	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/1	c0005	360	29	14	5	3	4	2	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	c0006	360	4	0	3	0	0	1	copy fasta	LOC728392	chr17	5494427	5506006