JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LOC728392_chr17_5494427_5506006	0/0	c0007	360	2	0	0	2	0	0	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	c0008	360	2	0	0	1	0	1	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	c0009	360	1	0	0	1	0	0	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	c0010	360	1	1	0	0	0	0	copy fasta	LOC728392	chr17	5494427	5506006
LOC728392_chr17_5494427_5506006	0/0	c0011	360	1	0	0	1	0	0	copy fasta	LOC728392	chr17	5494427	5506006
LOC728743_chr7_150400676_150417470	1/1	c0001	612	431	93	76	196	14	50	copy fasta	LOC728743	chr7	150400676	150417470
LOC728743_chr7_150400676_150417470	0/0	c0002	612	1	1	0	0	0	0	copy fasta	LOC728743	chr7	150400676	150417470
LOC729966_chr19_18245034_18260362	1/1	c0001	705	174	30	39	77	6	20	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	c0002	705	130	29	14	68	0	19	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	c0003	705	101	1	21	66	9	4	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	c0004	705	16	15	1	0	0	0	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	c0005	705	10	4	3	0	1	2	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	c0006	705	6	6	0	0	0	0	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	c0007	705	5	4	1	0	0	0	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	c0008	705	4	4	0	0	0	0	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	c0009	705	2	0	0	0	0	2	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	c0010	705	2	2	0	0	0	0	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	c0011	705	2	1	1	0	0	0	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	c0012	705	1	0	0	0	0	1	copy fasta	LOC729966	chr19	18245034	18260362
LOC729966_chr19_18245034_18260362	0/0	c0013	705	1	0	0	1	0	0	copy fasta	LOC729966	chr19	18245034	18260362
LOC730098_chr9_34659163_34671045	1/1	c0001	264	378	92	80	146	14	44	copy fasta	LOC730098	chr9	34659163	34671045
LOC93622_chr4_6669075_6681047	1/1	c0001	360	425	79	79	204	18	43	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	c0002	360	16	1	0	13	0	2	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	c0003	360	9	8	1	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	c0004	360	9	8	1	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	c0005	324	1	0	1	0	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	c0006	360	1	0	0	0	0	1	copy fasta	LOC93622	chr4	6669075	6681047
LOC93622_chr4_6669075_6681047	0/0	c0007	360	1	0	0	1	0	0	copy fasta	LOC93622	chr4	6669075	6681047
LONP1_chr19_5686834_5725146	1/1	c0001	2880	284	54	51	131	10	36	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0002	2880	48	17	14	10	3	4	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0003	2880	5	0	1	4	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0004	2880	5	1	3	1	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0005	2880	4	4	0	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0006	2880	3	3	0	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0007	2880	2	0	2	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0008	2880	2	0	0	2	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0009	2880	2	0	1	0	0	1	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0010	2880	2	0	1	0	1	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0011	2880	2	1	1	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0012	2880	1	1	0	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0013	2880	1	0	0	0	0	1	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0014	2880	1	0	0	1	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0015	2880	1	0	0	0	0	1	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0016	2880	1	0	0	0	1	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0017	2880	1	0	0	0	1	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0018	2880	1	0	0	1	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0019	2880	1	0	0	1	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0020	2880	1	0	0	0	0	1	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0021	2880	1	0	0	1	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0022	2880	1	1	0	0	0	0	copy fasta	LONP1	chr19	5686834	5725146