JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LONP1_chr19_5686834_5725146	0/0	c0023	2880	1	0	1	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0024	2880	1	0	0	1	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0025	2880	1	0	0	0	0	1	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0026	2880	1	1	0	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0027	2880	1	0	1	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0028	2880	1	0	0	1	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0029	2880	1	1	0	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0030	2880	1	1	0	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0031	2880	1	1	0	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0032	2880	1	0	1	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0033	2880	1	0	0	0	0	1	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0034	2880	1	0	0	1	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0035	2880	1	0	0	1	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0036	2880	1	0	1	0	0	0	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0037	2880	1	0	0	0	0	1	copy fasta	LONP1	chr19	5686834	5725146
LONP1_chr19_5686834_5725146	0/0	c0038	2880	1	0	0	0	0	1	copy fasta	LONP1	chr19	5686834	5725146
LONP2_chr16_48239300_48362349	1/1	c0001	2559	135	61	34	17	5	16	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	c0002	2559	10	10	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	c0003	2559	4	4	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	c0004	2559	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	c0005	2559	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	c0006	2559	1	1	0	0	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	c0007	2559	1	0	0	0	1	0	copy fasta	LONP2	chr16	48239300	48362349
LONP2_chr16_48239300_48362349	0/0	c0008	2559	1	0	0	1	0	0	copy fasta	LONP2	chr16	48239300	48362349
LONRF1_chr8_12716906_12760526	1/0	c0001	2322	373	89	62	169	12	40	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	c0002	2322	7	0	0	7	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/1	c0003	2322	7	1	5	0	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	c0004	2322	4	0	0	4	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	c0005	2322	3	0	0	1	0	2	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	c0006	2322	2	0	0	2	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	c0007	2322	1	1	0	0	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	c0008	2322	1	1	0	0	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	c0009	2322	1	1	0	0	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	c0010	2322	1	0	0	1	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	c0011	2322	1	0	1	0	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	c0012	2322	1	0	0	1	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	c0013	2322	1	0	0	1	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF1_chr8_12716906_12760526	0/0	c0014	2322	1	1	0	0	0	0	copy fasta	LONRF1	chr8	12716906	12760526
LONRF2_chr2_100266875_100327501	0/0	c0001	2265	103	58	13	25	1	6	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0002	2265	64	0	4	52	2	6	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	1/0	c0003	2265	57	9	17	10	4	16	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0004	2265	50	0	11	38	0	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0005	2265	20	0	12	0	2	6	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/1	c0006	2265	18	2	8	1	3	3	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0007	2265	10	0	0	10	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0008	2265	8	8	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0009	2265	4	0	0	4	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0010	2265	4	0	0	3	0	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0011	2265	4	0	1	3	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0012	2265	3	3	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501