Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ABCB1_chr7_87498017_87605884	0/0	c0026	3843	1	1	0	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0027	3843	1	0	0	0	0	1	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0028	3843	1	0	1	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0029	3843	1	0	1	0	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0030	3843	1	0	0	1	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0031	3843	1	0	0	1	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB1_chr7_87498017_87605884	0/0	c0032	3843	1	0	0	1	0	0	copy fasta	ABCB1	chr7	87498017	87605884
ABCB4_chr7_87396696_87480680	1/0	c0001	3840	74	18	16	34	2	3	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0002	3840	67	8	10	38	4	7	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/1	c0003	3840	65	0	14	35	1	14	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0004	3840	18	17	1	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0005	3840	12	2	4	3	1	2	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0006	3840	9	9	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0007	3840	6	0	1	4	1	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0008	3840	5	5	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0009	3840	5	2	1	0	1	1	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0010	3840	4	4	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0011	3840	4	4	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0012	3840	2	1	1	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0013	3840	2	2	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0014	3840	1	0	1	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0015	3840	1	0	0	1	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0016	3840	1	1	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0017	3840	1	1	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0018	3840	1	0	0	0	0	1	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0019	3840	1	1	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0020	3840	1	0	0	1	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0021	3840	1	1	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0022	3840	1	1	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0023	3840	1	1	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0024	3840	1	1	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0025	3840	1	0	1	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0026	3840	1	0	0	1	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0027	3840	1	1	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0028	3840	1	0	0	1	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0029	3840	1	1	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB4_chr7_87396696_87480680	0/0	c0030	3840	1	1	0	0	0	0	copy fasta	ABCB4	chr7	87396696	87480680
ABCB5_chr7_20610667_20762008	0/0	c0001	3774	40	5	8	19	2	6	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0002	3774	34	0	9	22	0	3	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0003	3774	32	2	7	23	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0004	3774	18	2	10	0	1	5	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0005	3774	15	1	4	8	0	2	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	1/0	c0006	3774	14	0	4	1	3	5	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0007	3774	12	0	0	9	0	3	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0008	3774	11	2	2	5	1	1	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0009	3774	10	0	1	8	0	1	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0010	3774	9	0	0	9	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0011	3774	8	4	4	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0012	3774	7	4	2	0	0	1	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	c0013	3774	6	0	1	1	0	4	copy fasta	ABCB5	chr7	20610667	20762008