JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ANKIB1_chr7_92240974_92406383	0/0	c0003	3270	70	6	9	48	0	7	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	c0004	3270	18	13	1	4	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	c0005	3270	16	0	6	10	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	c0006	3270	6	0	0	6	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	c0007	3270	4	0	0	4	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	c0008	3270	3	0	0	3	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	c0009	3270	3	3	0	0	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	c0010	3270	1	0	0	1	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKIB1_chr7_92240974_92406383	0/0	c0011	3270	1	0	0	1	0	0	copy fasta	ANKIB1	chr7	92240974	92406383
ANKK1_chr11_113382779_113405416	0/0	c0001	2298	136	24	13	87	2	10	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0002	2298	77	2	10	60	0	5	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/1	c0003	2298	61	2	27	17	5	9	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	1/0	c0004	2298	32	10	7	4	2	8	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0005	2298	9	8	1	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0006	2298	8	8	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0007	2298	6	0	0	6	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0008	2298	6	6	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0009	2298	6	6	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0010	2298	5	0	1	4	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0011	2298	5	3	2	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0012	2298	4	0	2	1	0	1	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0013	2298	4	0	3	0	1	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0014	2298	4	0	0	4	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0015	2298	4	4	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0016	2298	3	0	0	0	2	1	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0017	2298	3	3	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0018	2298	2	1	1	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0019	2298	2	0	1	0	0	1	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0020	2298	2	2	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0021	2298	2	2	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0022	2298	2	2	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0023	2298	2	2	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0024	2298	1	0	0	1	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0025	2298	1	0	0	1	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0026	2298	1	0	0	1	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0027	2298	1	1	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0028	2298	1	1	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0029	2298	1	0	0	1	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0030	2298	1	0	0	1	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0031	2298	1	0	0	0	0	1	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0032	2298	1	0	0	0	0	1	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0033	2298	1	0	1	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0034	2298	1	0	1	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0035	2298	1	1	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0036	2298	1	1	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0037	2298	1	0	0	0	0	1	copy fasta	ANKK1	chr11	113382779	113405416
ANKK1_chr11_113382779_113405416	0/0	c0038	2298	1	1	0	0	0	0	copy fasta	ANKK1	chr11	113382779	113405416
ANKLE1_chr19_17276901_17292646	1/0	c0001	1848	173	15	33	107	4	13	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0002	1848	130	22	20	63	8	17	copy fasta	ANKLE1	chr19	17276901	17292646
ANKLE1_chr19_17276901_17292646	0/0	c0003	1848	25	11	6	0	3	5	copy fasta	ANKLE1	chr19	17276901	17292646