JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LONRF2_chr2_100266875_100327501	0/0	c0013	2265	3	3	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0014	2265	3	3	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0015	2265	2	0	0	2	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0016	2265	2	1	1	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0017	2265	2	0	0	1	0	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0018	2265	2	2	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0019	2265	1	0	0	0	0	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0020	2265	1	0	1	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0021	2265	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0022	2265	1	0	0	0	0	1	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0023	2265	1	0	0	1	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0024	2265	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0025	2265	1	1	0	0	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0026	2265	1	0	0	1	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF2_chr2_100266875_100327501	0/0	c0027	2265	1	0	0	1	0	0	copy fasta	LONRF2	chr2	100266875	100327501
LONRF3_chrX_118969618_119023355	0/1	c0001	2280	143	7	26	95	5	9	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	c0002	2280	104	44	12	29	5	14	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	1/0	c0003	2280	25	2	9	7	1	5	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	c0004	2280	20	10	1	5	0	4	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	c0005	2280	7	6	1	0	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	c0006	2280	4	4	0	0	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	c0007	2280	1	0	1	0	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	c0008	2281	1	0	0	1	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	c0009	2280	1	0	0	1	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	c0010	2279	1	0	0	1	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	c0011	2280	1	1	0	0	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LONRF3_chrX_118969618_119023355	0/0	c0012	2281	1	0	0	1	0	0	copy fasta	LONRF3	chrX	118969618	119023355
LORICRIN_chr1_153254687_153267124	1/0	c0001	939	165	30	11	98	7	18	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/1	c0002	951	100	5	9	67	2	16	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	c0003	951	52	10	17	8	5	12	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	c0004	957	47	28	7	8	2	2	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	c0005	951	26	15	11	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	c0006	951	11	0	8	3	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	c0007	951	6	0	0	6	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	c0008	939	3	0	3	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	c0009	951	2	2	0	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	c0010	951	1	0	1	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	c0011	951	1	1	0	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	c0012	939	1	0	0	0	0	1	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	c0013	939	1	0	0	1	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	c0014	951	1	0	0	0	0	1	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	c0015	951	1	0	0	1	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	c0016	957	1	1	0	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	c0017	861	1	0	1	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	c0018	957	1	1	0	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LORICRIN_chr1_153254687_153267124	0/0	c0019	963	1	1	0	0	0	0	copy fasta	LORICRIN	chr1	153254687	153267124
LOXHD1_chr18_46472273_46662220	0/0	c0001	6822	64	8	12	36	2	6	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	1/1	c0002	6822	40	8	10	12	1	7	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0003	6822	40	15	9	5	5	6	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0004	6822	9	1	2	6	0	0	copy fasta	LOXHD1	chr18	46472273	46662220