JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LOXHD1_chr18_46472273_46662220	0/0	c0055	6822	1	1	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0056	6822	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0057	6822	1	0	0	0	0	1	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0058	6822	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0059	6822	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0060	6822	1	0	0	0	0	1	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0061	6822	1	1	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0062	6822	1	1	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0063	6822	1	1	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0064	6822	1	0	0	0	0	1	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0065	6822	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0066	6819	1	0	1	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0067	6819	1	0	0	0	0	1	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0068	6822	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0069	6822	1	0	0	0	0	1	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0070	6822	1	0	0	0	0	1	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0071	6822	1	0	0	0	1	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0072	6822	1	0	1	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0073	6822	1	0	0	0	0	1	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0074	6822	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0075	6822	1	1	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0076	6822	1	0	1	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0077	6822	1	0	0	1	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXHD1_chr18_46472273_46662220	0/0	c0078	6822	1	1	0	0	0	0	copy fasta	LOXHD1	chr18	46472273	46662220
LOXL1_chr15_73921462_73957136	0/1	c0001	1725	153	14	20	96	4	18	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	1/0	c0002	1725	106	20	34	23	9	19	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	c0003	1725	97	42	19	28	1	7	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	c0004	1725	64	2	7	49	0	6	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	c0005	1725	18	17	1	0	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	c0006	1725	2	2	0	0	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	c0007	1725	2	0	0	2	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	c0008	1725	1	0	1	0	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	c0009	1725	1	0	0	1	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	c0010	1725	1	1	0	0	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	c0011	1725	1	1	0	0	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	c0012	1725	1	1	0	0	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL1_chr15_73921462_73957136	0/0	c0013	1725	1	0	0	1	0	0	copy fasta	LOXL1	chr15	73921462	73957136
LOXL2_chr8_23291897_23409120	0/0	c0001	2325	68	10	18	25	6	9	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0002	2325	40	11	5	20	0	4	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/1	c0003	2325	35	5	7	15	1	6	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	1/0	c0004	2325	25	12	6	3	1	2	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0005	2325	15	2	1	8	0	4	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0006	2325	15	0	0	14	0	1	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0007	2325	15	0	6	9	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0008	2325	13	3	6	4	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0009	2325	9	0	1	8	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0010	2325	8	6	0	2	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0011	2325	8	7	0	1	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0012	2325	7	3	0	2	0	2	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0013	2325	6	5	1	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120