JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LOXL2_chr8_23291897_23409120	0/0	c0014	2325	6	4	1	1	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0015	2325	5	0	1	4	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0016	2325	5	0	4	1	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0017	2325	5	0	1	1	1	2	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0018	2325	4	4	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0019	2325	4	0	4	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0020	2325	4	1	0	0	1	2	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0021	2325	3	2	0	0	0	1	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0022	2325	3	0	0	2	0	1	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0023	2325	3	1	1	0	0	1	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0024	2325	3	0	3	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0025	2325	2	2	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0026	2325	2	0	0	2	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0027	2325	2	1	0	0	0	1	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0028	2325	2	0	0	2	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0029	2325	2	2	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0030	2325	2	0	0	0	0	2	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0031	2325	1	1	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0032	2325	1	0	0	0	0	1	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0033	2325	1	0	0	1	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0034	2325	1	0	0	1	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0035	2325	1	0	0	1	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0036	2325	1	1	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0037	2325	1	1	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0038	2325	1	1	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0039	2325	1	0	1	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0040	2325	1	1	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0041	2325	1	1	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0042	2325	1	1	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0043	2325	1	0	0	1	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0044	2325	1	0	0	0	0	1	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0045	2325	1	1	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0046	2325	1	0	1	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0047	2325	1	1	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0048	2325	1	0	0	1	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0049	2325	1	1	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0050	2325	1	0	1	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0051	2325	1	0	0	1	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0052	2325	1	0	0	1	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0053	2325	1	0	0	1	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0054	2325	1	1	0	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0055	2325	1	0	1	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0056	2325	1	0	1	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL2_chr8_23291897_23409120	0/0	c0057	2325	1	0	1	0	0	0	copy fasta	LOXL2	chr8	23291897	23409120
LOXL3_chr2_74527258_74558942	1/1	c0001	2262	189	75	41	52	3	16	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	c0002	2262	65	4	8	48	0	5	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	c0003	2262	55	1	6	47	0	1	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	c0004	2262	7	7	0	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	c0005	2262	5	5	0	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	c0006	2262	4	0	4	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942