JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LOXL3_chr2_74527258_74558942	0/0	c0007	2262	2	0	1	0	1	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	c0008	2262	1	1	0	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	c0009	2262	1	1	0	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	c0010	2262	1	0	0	1	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	c0011	2262	1	1	0	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL3_chr2_74527258_74558942	0/0	c0012	2262	1	1	0	0	0	0	copy fasta	LOXL3	chr2	74527258	74558942
LOXL4_chr10_98242690_98273194	0/0	c0001	2271	151	6	31	92	5	17	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	1/1	c0002	2271	113	55	16	29	2	9	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0003	2271	49	8	4	33	1	3	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0004	2271	46	14	12	8	7	5	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0005	2271	42	0	6	28	3	5	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0006	2271	6	0	1	5	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0007	2272	4	0	0	4	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0008	2271	3	0	0	3	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0009	2271	2	2	0	0	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0010	2271	2	2	0	0	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0011	2271	2	0	0	2	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0012	2271	2	0	2	0	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0013	2271	1	0	0	0	0	1	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0014	2271	1	0	0	0	0	1	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0015	2271	1	0	0	0	0	1	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0016	2271	1	0	0	0	0	1	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0017	2272	1	1	0	0	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0018	2272	1	1	0	0	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0019	2271	1	1	0	0	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0020	2272	1	0	0	1	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0021	2271	1	0	0	0	0	1	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0022	2271	1	0	0	1	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0023	2271	1	0	0	1	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0024	2271	1	0	0	1	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0025	2271	1	1	0	0	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0026	2271	1	1	0	0	0	0	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0027	2272	1	0	0	0	0	1	copy fasta	LOXL4	chr10	98242690	98273194
LOXL4_chr10_98242690_98273194	0/0	c0028	2271	1	0	0	0	0	1	copy fasta	LOXL4	chr10	98242690	98273194
LOX_chr5_122058195_122083259	1/1	c0001	1254	255	84	49	83	11	26	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	c0002	1254	53	12	12	22	1	6	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	c0003	1254	14	0	1	13	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	c0004	1254	1	1	0	0	0	0	copy fasta	LOX	chr5	122058195	122083259
LOX_chr5_122058195_122083259	0/0	c0005	1254	1	1	0	0	0	0	copy fasta	LOX	chr5	122058195	122083259
LPAR1_chr9_110868263_111043470	1/1	c0001	1095	260	84	46	88	12	28	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	c0002	1095	33	1	11	15	0	6	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	c0003	1095	5	4	1	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	c0004	1095	2	0	0	2	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	c0005	1095	1	1	0	0	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR1_chr9_110868263_111043470	0/0	c0006	1095	1	0	0	1	0	0	copy fasta	LPAR1	chr9	110868263	111043470
LPAR2_chr19_19618655_19633220	0/0	c0001	1047	309	89	65	106	12	37	copy fasta	LPAR2	chr19	19618655	19633220
LPAR2_chr19_19618655_19633220	0/1	c0002	1047	95	0	14	67	4	9	copy fasta	LPAR2	chr19	19618655	19633220
LPAR2_chr19_19618655_19633220	0/0	c0003	1047	4	4	0	0	0	0	copy fasta	LPAR2	chr19	19618655	19633220
LPAR2_chr19_19618655_19633220	0/0	c0004	1047	4	0	0	4	0	0	copy fasta	LPAR2	chr19	19618655	19633220
LPAR2_chr19_19618655_19633220	0/0	c0005	1047	2	1	1	0	0	0	copy fasta	LPAR2	chr19	19618655	19633220