JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LPAR2_chr19_19618655_19633220	0/0	c0006	1047	1	0	1	0	0	0	copy fasta	LPAR2	chr19	19618655	19633220
LPAR2_chr19_19618655_19633220	1/0	c0007	1047	1	0	0	0	0	0	copy fasta	LPAR2	chr19	19618655	19633220
LPAR2_chr19_19618655_19633220	0/0	c0008	1047	1	0	0	1	0	0	copy fasta	LPAR2	chr19	19618655	19633220
LPAR2_chr19_19618655_19633220	0/0	c0009	1047	1	0	1	0	0	0	copy fasta	LPAR2	chr19	19618655	19633220
LPAR3_chr1_84806602_84898206	1/1	c0001	1062	370	79	78	163	15	33	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	c0002	1062	3	3	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	c0003	1062	2	0	0	2	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	c0004	1062	2	2	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	c0005	1062	2	2	0	0	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	c0006	1062	1	0	0	0	1	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	c0007	1062	1	0	0	1	0	0	copy fasta	LPAR3	chr1	84806602	84898206
LPAR3_chr1_84806602_84898206	0/0	c0008	1062	1	0	0	0	0	1	copy fasta	LPAR3	chr1	84806602	84898206
LPAR4_chrX_78742720_78763714	1/1	c0001	1113	321	73	61	140	13	32	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	c0002	1113	2	2	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR4_chrX_78742720_78763714	0/0	c0003	1113	1	1	0	0	0	0	copy fasta	LPAR4	chrX	78742720	78763714
LPAR5_chr12_6613835_6640959	1/1	c0001	1119	382	87	76	163	13	41	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	c0002	1119	8	0	1	6	1	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	c0003	1119	5	2	1	1	0	1	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	c0004	1119	4	0	0	4	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	c0005	1119	3	0	0	0	0	3	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	c0006	1119	1	0	0	1	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	c0007	1119	1	0	0	0	0	1	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	c0008	1119	1	1	0	0	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR5_chr12_6613835_6640959	0/0	c0009	1119	1	0	0	1	0	0	copy fasta	LPAR5	chr12	6613835	6640959
LPAR6_chr13_48406138_48418113	1/1	c0001	1035	398	91	74	185	17	29	copy fasta	LPAR6	chr13	48406138	48418113
LPAR6_chr13_48406138_48418113	0/0	c0002	1035	2	0	0	2	0	0	copy fasta	LPAR6	chr13	48406138	48418113
LPAR6_chr13_48406138_48418113	0/0	c0003	1035	2	0	0	0	1	1	copy fasta	LPAR6	chr13	48406138	48418113
LPAR6_chr13_48406138_48418113	0/0	c0004	1035	1	1	0	0	0	0	copy fasta	LPAR6	chr13	48406138	48418113
LPAR6_chr13_48406138_48418113	0/0	c0005	1035	1	0	0	1	0	0	copy fasta	LPAR6	chr13	48406138	48418113
LPA_chr6_160526482_160669275	0/0	c0001	6123	29	3	9	9	2	6	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0002	6123	19	3	0	10	2	4	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/1	c0003	6123	15	8	2	2	1	1	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0004	6123	8	1	1	3	0	3	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0005	6123	6	6	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0006	6123	4	4	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0007	6123	4	0	0	2	0	2	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0008	6123	4	0	0	1	1	2	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	1/0	c0009	6123	4	0	1	1	0	1	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0010	6123	3	3	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0011	6123	3	0	0	2	0	1	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0012	6123	3	0	1	0	1	1	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0013	6123	2	2	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0014	6123	2	0	1	0	1	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0015	6123	2	0	0	0	0	2	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0016	6123	1	0	0	1	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0017	6123	1	0	0	1	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0018	6123	1	0	0	0	1	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0019	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0020	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0021	6123	1	0	1	0	0	0	copy fasta	LPA	chr6	160526482	160669275