JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LPA_chr6_160526482_160669275	0/0	c0022	6123	1	0	1	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0023	6123	1	0	1	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0024	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0025	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0026	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0027	6123	1	0	1	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0028	6123	1	0	0	1	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0029	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0030	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0031	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0032	6123	1	0	0	0	0	1	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0033	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0034	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0035	6123	1	0	1	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0036	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0037	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0038	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0039	6123	1	0	0	0	0	1	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0040	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0041	6123	1	0	0	0	1	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0042	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0043	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0044	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0045	6123	1	0	0	0	0	1	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0046	6123	1	0	0	1	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0047	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0048	6123	1	0	1	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0049	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0050	6123	1	0	1	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0051	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0052	4413	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0053	44945	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0054	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPA_chr6_160526482_160669275	0/0	c0055	6123	1	1	0	0	0	0	copy fasta	LPA	chr6	160526482	160669275
LPCAT1_chr5_1456427_1528960	1/1	c0001	1605	126	31	27	49	5	12	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0002	1605	84	25	11	35	4	9	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0003	1605	63	12	6	37	1	7	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0004	1605	39	7	5	23	0	4	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0005	1605	36	4	14	13	1	4	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0006	1605	10	3	3	2	0	2	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0007	1605	7	2	5	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0008	1605	6	0	1	0	4	1	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0009	1605	2	2	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0010	1605	2	2	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0011	1605	1	0	0	1	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0012	1605	1	1	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0013	1605	1	0	0	0	0	1	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0014	1605	1	1	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0015	1605	1	0	0	0	1	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0016	1605	1	1	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960