JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LPCAT1_chr5_1456427_1528960	0/0	c0017	1605	1	1	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0018	1605	1	0	0	1	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0019	1605	1	1	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0020	1605	1	1	0	0	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT1_chr5_1456427_1528960	0/0	c0021	1605	1	0	0	1	0	0	copy fasta	LPCAT1	chr5	1456427	1528960
LPCAT2_chr16_55504072_55591666	1/0	c0001	1635	129	46	16	54	6	6	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/1	c0002	1635	126	14	32	50	6	23	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	c0003	1635	30	13	2	13	0	2	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	c0004	1635	10	0	0	7	0	3	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	c0005	1635	5	4	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	c0006	1635	4	4	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	c0007	1635	4	0	2	0	0	2	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	c0008	1635	2	2	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	c0009	1635	1	1	0	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	c0010	1635	1	0	0	1	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	c0011	1635	1	0	1	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT2_chr16_55504072_55591666	0/0	c0012	1635	1	0	1	0	0	0	copy fasta	LPCAT2	chr16	55504072	55591666
LPCAT3_chr12_6971185_7023476	1/0	c0001	1464	184	34	36	90	6	17	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	c0002	1464	27	22	4	0	1	0	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	c0003	1464	24	16	3	3	0	2	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	c0004	1464	22	8	0	14	0	0	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/1	c0005	1464	8	2	1	1	0	3	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	c0006	1464	6	0	0	4	0	2	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	c0007	1464	5	5	0	0	0	0	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	c0008	1464	2	0	0	2	0	0	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	c0009	1464	1	0	0	1	0	0	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	c0010	1464	1	1	0	0	0	0	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	c0011	1464	1	0	0	1	0	0	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT3_chr12_6971185_7023476	0/0	c0012	1464	1	0	0	0	1	0	copy fasta	LPCAT3	chr12	6971185	7023476
LPCAT4_chr15_34353633_34372196	1/1	c0001	1575	436	92	74	203	18	47	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	c0002	1575	3	0	2	0	0	1	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	c0003	1575	3	0	0	3	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	c0004	1575	2	2	0	0	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	c0005	1575	1	1	0	0	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	c0006	1575	1	0	0	1	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	c0007	1575	1	1	0	0	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	c0008	1575	1	1	0	0	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	c0009	1575	1	0	0	1	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPCAT4_chr15_34353633_34372196	0/0	c0010	1575	1	1	0	0	0	0	copy fasta	LPCAT4	chr15	34353633	34372196
LPGAT1_chr1_211738457_211835763	1/1	c0001	1113	331	77	70	126	14	42	copy fasta	LPGAT1	chr1	211738457	211835763
LPGAT1_chr1_211738457_211835763	0/0	c0002	1113	1	1	0	0	0	0	copy fasta	LPGAT1	chr1	211738457	211835763
LPIN1_chr2_11741632_11832409	1/1	c0001	2781	230	57	42	91	11	27	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	c0002	2781	13	12	0	0	0	1	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	c0003	2781	10	0	6	0	2	2	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	c0004	2781	6	4	2	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	c0005	2781	5	5	0	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	c0006	2781	3	0	2	0	1	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	c0007	2778	3	2	1	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	c0008	2781	2	2	0	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	c0009	2778	2	2	0	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409