JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
LPIN1_chr2_11741632_11832409	0/0	c0010	2778	1	1	0	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	c0011	2781	1	1	0	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	c0012	2781	1	0	0	1	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN1_chr2_11741632_11832409	0/0	c0013	2781	1	0	1	0	0	0	copy fasta	LPIN1	chr2	11741632	11832409
LPIN2_chr18_2911999_3018144	1/0	c0001	2691	355	76	69	162	8	39	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/1	c0002	2691	5	2	0	0	2	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	c0003	2691	3	3	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	c0004	2691	3	3	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	c0005	2691	1	0	0	0	0	1	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	c0006	2691	1	0	0	0	0	1	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	c0007	2691	1	1	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	c0008	2691	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	c0009	2691	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	c0010	2691	1	1	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	c0011	2691	1	0	0	0	0	1	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	c0012	2691	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	c0013	2691	1	0	1	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	c0014	2691	1	0	0	1	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	c0015	2691	1	0	1	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	c0016	2691	1	0	1	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	c0017	2691	1	1	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN2_chr18_2911999_3018144	0/0	c0018	2691	1	1	0	0	0	0	copy fasta	LPIN2	chr18	2911999	3018144
LPIN3_chr20_41335821_41365582	1/1	c0001	2556	188	38	29	83	10	26	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0002	2556	105	0	10	94	0	1	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0003	2556	43	15	11	8	5	4	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0004	2556	17	15	2	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0005	2556	10	5	3	0	0	2	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0006	2556	7	0	0	7	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0007	2556	6	4	2	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0008	2556	5	5	0	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0009	2556	4	0	0	4	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0010	2556	2	0	1	0	1	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0011	2556	2	0	0	2	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0012	2556	2	0	0	0	2	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0013	2556	1	0	0	0	0	1	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0014	2556	1	1	0	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0015	2556	1	0	0	0	0	1	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0016	2556	1	0	0	0	0	1	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0017	2556	1	1	0	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0018	2556	1	0	1	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0019	2556	1	0	1	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0020	2556	1	0	1	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0021	2556	1	1	0	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0022	2556	1	0	0	1	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0023	2556	1	0	0	1	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0024	2556	1	0	1	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPIN3_chr20_41335821_41365582	0/0	c0025	2556	1	1	0	0	0	0	copy fasta	LPIN3	chr20	41335821	41365582
LPL_chr8_19934253_19972259	1/1	c0001	4518	155	3	32	89	5	24	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0002	4519	35	3	12	11	3	6	copy fasta	LPL	chr8	19934253	19972259
LPL_chr8_19934253_19972259	0/0	c0003	4519	31	1	7	16	3	4	copy fasta	LPL	chr8	19934253	19972259